Sulfurovum sp. UBA12169

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Sulfurovaceae; Sulfurovum; unclassified Sulfurovum

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1860 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D3WS76|A0A2D3WS76_9PROT Two-component system response regulator OS=Sulfurovum sp. UBA12169 OX=2015906 GN=CFH81_07960 PE=4 SV=1
MM1 pKa = 7.74KK2 pKa = 9.02KK3 pKa = 8.18TLLLSVVASTMIMAGGDD20 pKa = 3.49IAPVEE25 pKa = 4.32PVVEE29 pKa = 4.79TPAPAVSGWEE39 pKa = 4.06FSGQAALYY47 pKa = 8.58YY48 pKa = 8.49QTHH51 pKa = 7.01DD52 pKa = 3.2AFGYY56 pKa = 10.61SDD58 pKa = 6.04LFDD61 pKa = 3.99QDD63 pKa = 3.44SSAANAGLQLRR74 pKa = 11.84AVNADD79 pKa = 4.08LYY81 pKa = 10.56NGIGAGVEE89 pKa = 4.16VSGLATFDD97 pKa = 4.23LEE99 pKa = 4.26NSVVSDD105 pKa = 3.17VMQGFGTDD113 pKa = 3.89DD114 pKa = 4.92LDD116 pKa = 4.79GGWISQMYY124 pKa = 8.19LTYY127 pKa = 10.99GFDD130 pKa = 3.29NTSFKK135 pKa = 10.77LGRR138 pKa = 11.84QEE140 pKa = 4.22LPKK143 pKa = 10.51ALSPFAFSEE152 pKa = 4.03EE153 pKa = 3.96WNVFKK158 pKa = 10.37NTYY161 pKa = 9.88DD162 pKa = 3.24ALLVVNSDD170 pKa = 2.98ISNTTLVGAWVRR182 pKa = 11.84SANQNGYY189 pKa = 9.98GLGAMNGFNPSFNFQAGMPPILGTPASDD217 pKa = 3.0MNSFEE222 pKa = 5.18EE223 pKa = 4.07INGDD227 pKa = 3.25HH228 pKa = 6.43GVFMLTAQNKK238 pKa = 9.58SIEE241 pKa = 4.18NLTLTGSWYY250 pKa = 10.46YY251 pKa = 11.39SNEE254 pKa = 3.45FLTNDD259 pKa = 4.51DD260 pKa = 5.95LNILWGDD267 pKa = 3.35AQYY270 pKa = 11.77NFMQNYY276 pKa = 8.01TLGLQGGTVMHH287 pKa = 7.25DD288 pKa = 2.98AFEE291 pKa = 4.49TFNSGDD297 pKa = 3.47DD298 pKa = 3.67TVAFGAMIGGKK309 pKa = 9.88YY310 pKa = 10.27DD311 pKa = 3.29IFHH314 pKa = 6.93GALAFSSVDD323 pKa = 3.31DD324 pKa = 4.16GGFGVFNVGGQQTALYY340 pKa = 7.88TQMMFNEE347 pKa = 4.08RR348 pKa = 11.84AIAFDD353 pKa = 3.54SDD355 pKa = 3.36TFMVKK360 pKa = 10.14VGADD364 pKa = 3.25VFGGKK369 pKa = 8.76VCAAYY374 pKa = 10.29GMSDD378 pKa = 3.25MGMGDD383 pKa = 3.63YY384 pKa = 11.47NEE386 pKa = 4.96FDD388 pKa = 3.51LSYY391 pKa = 10.24SAKK394 pKa = 9.05VTDD397 pKa = 5.53SIDD400 pKa = 3.11LTAAYY405 pKa = 10.33AFMDD409 pKa = 4.16ADD411 pKa = 4.29VEE413 pKa = 5.38DD414 pKa = 5.68FDD416 pKa = 5.04DD417 pKa = 4.04TNNVIRR423 pKa = 11.84VIGRR427 pKa = 11.84YY428 pKa = 8.34NFF430 pKa = 3.39

Molecular weight: 46.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D3WHJ4|A0A2D3WHJ4_9PROT MFS transporter OS=Sulfurovum sp. UBA12169 OX=2015906 GN=CFH81_06545 PE=4 SV=1
MM1 pKa = 7.28KK2 pKa = 9.39RR3 pKa = 11.84TYY5 pKa = 10.06QPHH8 pKa = 4.56TTPRR12 pKa = 11.84KK13 pKa = 7.32RR14 pKa = 11.84THH16 pKa = 6.24GFRR19 pKa = 11.84TRR21 pKa = 11.84MKK23 pKa = 8.87TKK25 pKa = 10.11NGRR28 pKa = 11.84KK29 pKa = 9.33VISARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.1GRR39 pKa = 11.84KK40 pKa = 8.77KK41 pKa = 10.27LAAA44 pKa = 4.49

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1860

0

1860

564002

37

1807

303.2

34.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.87 ± 0.056

0.939 ± 0.023

5.403 ± 0.042

7.136 ± 0.054

4.749 ± 0.047

6.551 ± 0.043

2.132 ± 0.025

7.959 ± 0.054

7.957 ± 0.054

9.607 ± 0.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.819 ± 0.029

4.3 ± 0.04

3.311 ± 0.034

3.34 ± 0.032

3.791 ± 0.036

6.0 ± 0.042

5.195 ± 0.046

6.275 ± 0.046

0.844 ± 0.018

3.821 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski