Arthronema virus TR020

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae

Average proteome isoelectric point is 5.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 55 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A7G5AWZ8|A0A7G5AWZ8_9CAUD Putative endopeptidase OS=Arthronema virus TR020 OX=2736280 PE=4 SV=1
MM1 pKa = 7.37PNSVRR6 pKa = 11.84VLWDD10 pKa = 3.58DD11 pKa = 4.6DD12 pKa = 3.45FTGYY16 pKa = 7.57VTCDD20 pKa = 3.42LQDD23 pKa = 3.38GTLHH27 pKa = 6.01YY28 pKa = 11.31GEE30 pKa = 5.02VPLEE34 pKa = 3.63LMTYY38 pKa = 9.56HH39 pKa = 6.19NQPIEE44 pKa = 4.95DD45 pKa = 4.34IYY47 pKa = 11.62DD48 pKa = 3.83DD49 pKa = 4.04YY50 pKa = 12.25

Molecular weight: 5.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A7G3WH16|A0A7G3WH16_9CAUD Uncharacterized protein OS=Arthronema virus TR020 OX=2736280 PE=4 SV=1
MM1 pKa = 6.73NTRR4 pKa = 11.84VLLTFLVFLMFSAHH18 pKa = 6.38AALALRR24 pKa = 11.84HH25 pKa = 5.67MLGSHH30 pKa = 6.31LQRR33 pKa = 11.84LNTIEE38 pKa = 3.8QSEE41 pKa = 4.49RR42 pKa = 11.84KK43 pKa = 8.68HH44 pKa = 4.91QQ45 pKa = 3.63

Molecular weight: 5.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

55

0

55

13728

31

1506

249.6

28.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.561 ± 0.374

0.386 ± 0.095

6.119 ± 0.259

6.52 ± 0.399

3.795 ± 0.246

6.439 ± 0.243

1.632 ± 0.199

4.939 ± 0.245

4.924 ± 0.273

9.521 ± 0.297

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.426 ± 0.221

5.507 ± 0.259

4.159 ± 0.392

4.538 ± 0.378

5.704 ± 0.259

6.6 ± 0.376

6.993 ± 0.431

7.059 ± 0.327

1.151 ± 0.124

4.028 ± 0.293
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski