Dongia mobilis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Dongia

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3804 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V3DF21|A0A4V3DF21_9PROT Tfp pilus assembly protein PilF OS=Dongia mobilis OX=578943 GN=A8950_0922 PE=4 SV=1
MM1 pKa = 7.12VPVAIANLGNLEE13 pKa = 4.15MKK15 pKa = 10.29KK16 pKa = 10.52VLLGTSALLGVGLLAGTAQASDD38 pKa = 3.89GVKK41 pKa = 10.51LSLGGYY47 pKa = 6.56MTNQMGVAFDD57 pKa = 4.69DD58 pKa = 4.76DD59 pKa = 4.39SAGEE63 pKa = 4.12AGDD66 pKa = 4.17NINAFGVGTDD76 pKa = 3.38AEE78 pKa = 4.69IYY80 pKa = 10.58FIGSVTLDD88 pKa = 3.1NGVTVGVRR96 pKa = 11.84FDD98 pKa = 4.9LEE100 pKa = 4.98GGDD103 pKa = 4.07EE104 pKa = 4.87NNDD107 pKa = 3.82QMDD110 pKa = 3.16QAYY113 pKa = 9.9AYY115 pKa = 9.73FKK117 pKa = 11.17GGFGDD122 pKa = 3.85IRR124 pKa = 11.84IGSQAGAAGNMYY136 pKa = 8.76MLPPGSTANFGPYY149 pKa = 9.84SPNTTGSALSPGVFDD164 pKa = 5.32PEE166 pKa = 4.42GMLANQDD173 pKa = 3.38KK174 pKa = 10.21SQKK177 pKa = 9.88LVYY180 pKa = 10.32YY181 pKa = 9.65SPNWSGFSFGVSFTPNDD198 pKa = 3.33NEE200 pKa = 4.0KK201 pKa = 10.99DD202 pKa = 3.88YY203 pKa = 11.79NNGDD207 pKa = 3.63NADD210 pKa = 4.02GQWRR214 pKa = 11.84AASAQGDD221 pKa = 3.76SDD223 pKa = 4.37NNIGLGLHH231 pKa = 5.58YY232 pKa = 9.55THH234 pKa = 7.17EE235 pKa = 4.85GDD237 pKa = 4.55GWGLDD242 pKa = 3.93LGAAAYY248 pKa = 9.24WEE250 pKa = 4.62GDD252 pKa = 3.6VQQKK256 pKa = 9.63VAGQDD261 pKa = 3.18EE262 pKa = 4.41QAGYY266 pKa = 9.87NAGINLSFGGFAFGVAGTYY285 pKa = 10.61LDD287 pKa = 4.89DD288 pKa = 5.1GNGAGQDD295 pKa = 2.75IWSIGTGMTYY305 pKa = 10.38NVEE308 pKa = 3.64AWTVGLGWAHH318 pKa = 7.25AEE320 pKa = 4.18LEE322 pKa = 4.48VAGARR327 pKa = 11.84DD328 pKa = 3.46ASADD332 pKa = 3.7RR333 pKa = 11.84VGVTGNYY340 pKa = 10.83AMGPGIDD347 pKa = 3.78LDD349 pKa = 4.12AGIFYY354 pKa = 9.0TWGEE358 pKa = 4.15DD359 pKa = 3.39AVGEE363 pKa = 4.04GDD365 pKa = 3.48YY366 pKa = 11.4DD367 pKa = 4.39SIEE370 pKa = 4.34FGVGSSISFF379 pKa = 3.54

Molecular weight: 39.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R6WN28|A0A4R6WN28_9PROT DNA helicase OS=Dongia mobilis OX=578943 GN=A8950_2245 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 8.95RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.63GFRR19 pKa = 11.84SRR21 pKa = 11.84MATNGGQKK29 pKa = 10.15VISSRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.8GRR39 pKa = 11.84KK40 pKa = 8.92RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3804

0

3804

1260373

27

4980

331.3

35.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.2 ± 0.064

0.886 ± 0.012

5.683 ± 0.042

5.538 ± 0.042

3.64 ± 0.024

8.824 ± 0.044

2.061 ± 0.019

5.361 ± 0.029

3.16 ± 0.032

10.651 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.478 ± 0.019

2.574 ± 0.027

5.219 ± 0.031

3.313 ± 0.026

7.144 ± 0.049

4.845 ± 0.026

4.807 ± 0.033

7.072 ± 0.032

1.343 ± 0.017

2.201 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski