Amino acid dipepetide frequency for Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491) (Nematode-trapping fungus) (Didymozoophaga oligospora)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
7.623AlaAla: 7.623 ± 0.056
0.917AlaCys: 0.917 ± 0.016
3.589AlaAsp: 3.589 ± 0.028
4.685AlaGlu: 4.685 ± 0.039
2.697AlaPhe: 2.697 ± 0.027
5.139AlaGly: 5.139 ± 0.032
1.364AlaHis: 1.364 ± 0.017
4.228AlaIle: 4.228 ± 0.03
4.048AlaLys: 4.048 ± 0.036
6.468AlaLeu: 6.468 ± 0.039
1.628AlaMet: 1.628 ± 0.018
2.783AlaAsn: 2.783 ± 0.026
4.445AlaPro: 4.445 ± 0.04
2.79AlaGln: 2.79 ± 0.029
4.046AlaArg: 4.046 ± 0.03
6.356AlaSer: 6.356 ± 0.041
5.004AlaThr: 5.004 ± 0.035
4.704AlaVal: 4.704 ± 0.033
0.919AlaTrp: 0.919 ± 0.014
2.005AlaTyr: 2.005 ± 0.024
0.0AlaXaa: 0.0 ± 0.0
Cys
0.82CysAla: 0.82 ± 0.013
0.252CysCys: 0.252 ± 0.009
0.657CysAsp: 0.657 ± 0.013
0.64CysGlu: 0.64 ± 0.012
0.525CysPhe: 0.525 ± 0.011
0.978CysGly: 0.978 ± 0.02
0.287CysHis: 0.287 ± 0.008
0.707CysIle: 0.707 ± 0.011
0.607CysLys: 0.607 ± 0.012
1.167CysLeu: 1.167 ± 0.017
0.233CysMet: 0.233 ± 0.006
0.481CysAsn: 0.481 ± 0.01
0.708CysPro: 0.708 ± 0.015
0.443CysGln: 0.443 ± 0.009
0.719CysArg: 0.719 ± 0.014
0.894CysSer: 0.894 ± 0.015
0.683CysThr: 0.683 ± 0.014
0.722CysVal: 0.722 ± 0.013
0.188CysTrp: 0.188 ± 0.006
0.393CysTyr: 0.393 ± 0.009
0.0CysXaa: 0.0 ± 0.0
Asp
3.838AspAla: 3.838 ± 0.03
0.65AspCys: 0.65 ± 0.012
4.455AspAsp: 4.455 ± 0.044
4.732AspGlu: 4.732 ± 0.036
2.266AspPhe: 2.266 ± 0.022
4.064AspGly: 4.064 ± 0.031
1.134AspHis: 1.134 ± 0.016
3.615AspIle: 3.615 ± 0.025
2.607AspLys: 2.607 ± 0.025
4.901AspLeu: 4.901 ± 0.029
1.188AspMet: 1.188 ± 0.014
2.071AspAsn: 2.071 ± 0.02
3.298AspPro: 3.298 ± 0.027
1.72AspGln: 1.72 ± 0.016
2.778AspArg: 2.778 ± 0.026
4.125AspSer: 4.125 ± 0.031
3.028AspThr: 3.028 ± 0.024
3.425AspVal: 3.425 ± 0.03
0.857AspTrp: 0.857 ± 0.013
1.738AspTyr: 1.738 ± 0.017
0.0AspXaa: 0.0 ± 0.0
Glu
5.044GluAla: 5.044 ± 0.043
0.667GluCys: 0.667 ± 0.012
4.639GluAsp: 4.639 ± 0.035
6.757GluGlu: 6.757 ± 0.075
2.221GluPhe: 2.221 ± 0.021
4.135GluGly: 4.135 ± 0.028
1.234GluHis: 1.234 ± 0.018
3.711GluIle: 3.711 ± 0.031
4.346GluLys: 4.346 ± 0.041
5.245GluLeu: 5.245 ± 0.03
1.479GluMet: 1.479 ± 0.015
2.816GluAsn: 2.816 ± 0.024
2.952GluPro: 2.952 ± 0.043
2.244GluGln: 2.244 ± 0.025
3.939GluArg: 3.939 ± 0.044
4.433GluSer: 4.433 ± 0.037
3.779GluThr: 3.779 ± 0.035
3.833GluVal: 3.833 ± 0.032
0.872GluTrp: 0.872 ± 0.011
1.974GluTyr: 1.974 ± 0.019
0.0GluXaa: 0.0 ± 0.0
Phe
2.61PheAla: 2.61 ± 0.023
0.548PheCys: 0.548 ± 0.011
2.289PheAsp: 2.289 ± 0.022
2.395PheGlu: 2.395 ± 0.02
1.608PhePhe: 1.608 ± 0.018
2.879PheGly: 2.879 ± 0.031
0.84PheHis: 0.84 ± 0.013
1.89PheIle: 1.89 ± 0.022
1.868PheLys: 1.868 ± 0.019
3.383PheLeu: 3.383 ± 0.031
0.75PheMet: 0.75 ± 0.012
1.547PheAsn: 1.547 ± 0.017
1.972PhePro: 1.972 ± 0.02
1.445PheGln: 1.445 ± 0.016
1.947PheArg: 1.947 ± 0.021
3.043PheSer: 3.043 ± 0.025
2.247PheThr: 2.247 ± 0.024
2.227PheVal: 2.227 ± 0.021
0.613PheTrp: 0.613 ± 0.01
1.15PheTyr: 1.15 ± 0.016
0.0PheXaa: 0.0 ± 0.0
Gly
4.712GlyAla: 4.712 ± 0.035
0.886GlyCys: 0.886 ± 0.018
3.692GlyAsp: 3.692 ± 0.025
3.89GlyGlu: 3.89 ± 0.031
2.842GlyPhe: 2.842 ± 0.028
6.399GlyGly: 6.399 ± 0.05
1.498GlyHis: 1.498 ± 0.018
3.726GlyIle: 3.726 ± 0.029
3.836GlyLys: 3.836 ± 0.028
5.63GlyLeu: 5.63 ± 0.035
1.468GlyMet: 1.468 ± 0.019
2.913GlyAsn: 2.913 ± 0.03
3.207GlyPro: 3.207 ± 0.028
2.282GlyGln: 2.282 ± 0.025
3.91GlyArg: 3.91 ± 0.034
5.79GlySer: 5.79 ± 0.043
4.022GlyThr: 4.022 ± 0.034
4.305GlyVal: 4.305 ± 0.032
1.117GlyTrp: 1.117 ± 0.014
2.306GlyTyr: 2.306 ± 0.026
0.0GlyXaa: 0.0 ± 0.0
His
1.396HisAla: 1.396 ± 0.017
0.303HisCys: 0.303 ± 0.009
1.126HisAsp: 1.126 ± 0.014
1.225HisGlu: 1.225 ± 0.016
0.857HisPhe: 0.857 ± 0.013
1.502HisGly: 1.502 ± 0.019
0.895HisHis: 0.895 ± 0.017
1.246HisIle: 1.246 ± 0.016
1.006HisLys: 1.006 ± 0.014
2.05HisLeu: 2.05 ± 0.021
0.437HisMet: 0.437 ± 0.008
0.854HisAsn: 0.854 ± 0.016
1.563HisPro: 1.563 ± 0.02
0.971HisGln: 0.971 ± 0.018
1.358HisArg: 1.358 ± 0.018
1.679HisSer: 1.679 ± 0.022
1.208HisThr: 1.208 ± 0.016
1.143HisVal: 1.143 ± 0.014
0.3HisTrp: 0.3 ± 0.009
0.67HisTyr: 0.67 ± 0.011
0.0HisXaa: 0.0 ± 0.0
Ile
4.029IleAla: 4.029 ± 0.032
0.799IleCys: 0.799 ± 0.013
3.178IleAsp: 3.178 ± 0.025
3.35IleGlu: 3.35 ± 0.03
2.171IlePhe: 2.171 ± 0.021
3.341IleGly: 3.341 ± 0.029
1.24IleHis: 1.24 ± 0.015
2.93IleIle: 2.93 ± 0.025
2.848IleLys: 2.848 ± 0.025
4.949IleLeu: 4.949 ± 0.036
1.021IleMet: 1.021 ± 0.014
2.181IleAsn: 2.181 ± 0.019
3.568IlePro: 3.568 ± 0.026
2.039IleGln: 2.039 ± 0.021
3.016IleArg: 3.016 ± 0.026
4.512IleSer: 4.512 ± 0.036
3.381IleThr: 3.381 ± 0.03
3.29IleVal: 3.29 ± 0.03
0.754IleTrp: 0.754 ± 0.012
1.6IleTyr: 1.6 ± 0.02
0.0IleXaa: 0.0 ± 0.0
Lys
4.258LysAla: 4.258 ± 0.033
0.607LysCys: 0.607 ± 0.012
3.171LysAsp: 3.171 ± 0.029
4.121LysGlu: 4.121 ± 0.038
1.846LysPhe: 1.846 ± 0.019
3.333LysGly: 3.333 ± 0.026
1.131LysHis: 1.131 ± 0.016
2.949LysIle: 2.949 ± 0.026
4.287LysLys: 4.287 ± 0.048
4.65LysLeu: 4.65 ± 0.037
1.109LysMet: 1.109 ± 0.013
2.245LysAsn: 2.245 ± 0.023
3.063LysPro: 3.063 ± 0.03
1.907LysGln: 1.907 ± 0.02
3.71LysArg: 3.71 ± 0.03
4.113LysSer: 4.113 ± 0.032
3.278LysThr: 3.278 ± 0.026
3.221LysVal: 3.221 ± 0.027
0.75LysTrp: 0.75 ± 0.012
1.68LysTyr: 1.68 ± 0.019
0.0LysXaa: 0.0 ± 0.0
Leu
6.684LeuAla: 6.684 ± 0.041
1.095LeuCys: 1.095 ± 0.017
4.915LeuAsp: 4.915 ± 0.03
5.973LeuGlu: 5.973 ± 0.044
3.119LeuPhe: 3.119 ± 0.033
5.426LeuGly: 5.426 ± 0.035
1.999LeuHis: 1.999 ± 0.017
3.985LeuIle: 3.985 ± 0.035
4.926LeuLys: 4.926 ± 0.034
7.792LeuLeu: 7.792 ± 0.055
1.632LeuMet: 1.632 ± 0.016
3.341LeuAsn: 3.341 ± 0.024
5.379LeuPro: 5.379 ± 0.043
3.658LeuGln: 3.658 ± 0.028
5.23LeuArg: 5.23 ± 0.035
7.027LeuSer: 7.027 ± 0.04
4.76LeuThr: 4.76 ± 0.031
4.9LeuVal: 4.9 ± 0.033
1.13LeuTrp: 1.13 ± 0.016
2.331LeuTyr: 2.331 ± 0.021
0.0LeuXaa: 0.0 ± 0.0
Met
1.858MetAla: 1.858 ± 0.02
0.215MetCys: 0.215 ± 0.006
1.192MetAsp: 1.192 ± 0.016
1.394MetGlu: 1.394 ± 0.018
0.705MetPhe: 0.705 ± 0.011
1.358MetGly: 1.358 ± 0.017
0.421MetHis: 0.421 ± 0.008
1.003MetIle: 1.003 ± 0.014
1.18MetLys: 1.18 ± 0.016
1.617MetLeu: 1.617 ± 0.016
0.542MetMet: 0.542 ± 0.012
0.802MetAsn: 0.802 ± 0.013
1.13MetPro: 1.13 ± 0.018
0.765MetGln: 0.765 ± 0.013
1.117MetArg: 1.117 ± 0.014
1.73MetSer: 1.73 ± 0.016
1.171MetThr: 1.171 ± 0.015
1.256MetVal: 1.256 ± 0.016
0.235MetTrp: 0.235 ± 0.006
0.495MetTyr: 0.495 ± 0.01
0.0MetXaa: 0.0 ± 0.0
Asn
2.864AsnAla: 2.864 ± 0.022
0.53AsnCys: 0.53 ± 0.012
2.11AsnAsp: 2.11 ± 0.02
2.22AsnGlu: 2.22 ± 0.022
1.607AsnPhe: 1.607 ± 0.018
3.23AsnGly: 3.23 ± 0.032
0.921AsnHis: 0.921 ± 0.014
2.537AsnIle: 2.537 ± 0.022
1.875AsnLys: 1.875 ± 0.022
3.632AsnLeu: 3.632 ± 0.028
0.869AsnMet: 0.869 ± 0.014
2.009AsnAsn: 2.009 ± 0.034
2.883AsnPro: 2.883 ± 0.027
1.516AsnGln: 1.516 ± 0.019
2.115AsnArg: 2.115 ± 0.021
3.296AsnSer: 3.296 ± 0.031
2.577AsnThr: 2.577 ± 0.021
2.312AsnVal: 2.312 ± 0.022
0.598AsnTrp: 0.598 ± 0.01
1.23AsnTyr: 1.23 ± 0.017
0.0AsnXaa: 0.0 ± 0.0
Pro
4.657ProAla: 4.657 ± 0.037
0.471ProCys: 0.471 ± 0.013
3.007ProAsp: 3.007 ± 0.026
4.007ProGlu: 4.007 ± 0.037
1.989ProPhe: 1.989 ± 0.018
3.912ProGly: 3.912 ± 0.034
1.25ProHis: 1.25 ± 0.02
2.989ProIle: 2.989 ± 0.026
3.156ProLys: 3.156 ± 0.03
4.575ProLeu: 4.575 ± 0.036
1.006ProMet: 1.006 ± 0.014
2.527ProAsn: 2.527 ± 0.028
5.94ProPro: 5.94 ± 0.083
2.569ProGln: 2.569 ± 0.033
3.231ProArg: 3.231 ± 0.029
6.051ProSer: 6.051 ± 0.048
4.618ProThr: 4.618 ± 0.047
3.602ProVal: 3.602 ± 0.032
0.666ProTrp: 0.666 ± 0.011
1.535ProTyr: 1.535 ± 0.019
0.0ProXaa: 0.0 ± 0.0
Gln
2.853GlnAla: 2.853 ± 0.025
0.439GlnCys: 0.439 ± 0.013
1.905GlnAsp: 1.905 ± 0.016
2.427GlnGlu: 2.427 ± 0.025
1.272GlnPhe: 1.272 ± 0.015
2.201GlnGly: 2.201 ± 0.022
0.92GlnHis: 0.92 ± 0.013
2.037GlnIle: 2.037 ± 0.02
2.21GlnLys: 2.21 ± 0.022
3.18GlnLeu: 3.18 ± 0.027
0.802GlnMet: 0.802 ± 0.013
1.793GlnAsn: 1.793 ± 0.022
2.432GlnPro: 2.432 ± 0.033
2.516GlnGln: 2.516 ± 0.062
2.322GlnArg: 2.322 ± 0.025
2.928GlnSer: 2.928 ± 0.025
2.338GlnThr: 2.338 ± 0.023
1.983GlnVal: 1.983 ± 0.021
0.494GlnTrp: 0.494 ± 0.01
1.172GlnTyr: 1.172 ± 0.014
0.0GlnXaa: 0.0 ± 0.0
Arg
3.886ArgAla: 3.886 ± 0.031
0.674ArgCys: 0.674 ± 0.011
3.215ArgAsp: 3.215 ± 0.029
3.797ArgGlu: 3.797 ± 0.042
2.098ArgPhe: 2.098 ± 0.018
3.627ArgGly: 3.627 ± 0.039
1.347ArgHis: 1.347 ± 0.016
3.013ArgIle: 3.013 ± 0.025
3.728ArgLys: 3.728 ± 0.033
4.969ArgLeu: 4.969 ± 0.036
1.239ArgMet: 1.239 ± 0.015
2.419ArgAsn: 2.419 ± 0.023
3.201ArgPro: 3.201 ± 0.028
2.336ArgGln: 2.336 ± 0.024
4.75ArgArg: 4.75 ± 0.044
4.522ArgSer: 4.522 ± 0.037
3.168ArgThr: 3.168 ± 0.028
3.124ArgVal: 3.124 ± 0.027
0.814ArgTrp: 0.814 ± 0.014
1.749ArgTyr: 1.749 ± 0.018
0.0ArgXaa: 0.0 ± 0.0
Ser
5.813SerAla: 5.813 ± 0.038
0.871SerCys: 0.871 ± 0.015
4.191SerAsp: 4.191 ± 0.033
4.423SerGlu: 4.423 ± 0.037
3.046SerPhe: 3.046 ± 0.025
5.754SerGly: 5.754 ± 0.039
1.853SerHis: 1.853 ± 0.024
4.536SerIle: 4.536 ± 0.032
4.287SerLys: 4.287 ± 0.03
6.971SerLeu: 6.971 ± 0.044
1.565SerMet: 1.565 ± 0.018
3.434SerAsn: 3.434 ± 0.03
5.581SerPro: 5.581 ± 0.054
3.189SerGln: 3.189 ± 0.031
4.845SerArg: 4.845 ± 0.04
9.411SerSer: 9.411 ± 0.091
6.168SerThr: 6.168 ± 0.064
4.357SerVal: 4.357 ± 0.03
1.007SerTrp: 1.007 ± 0.015
2.211SerTyr: 2.211 ± 0.022
0.0SerXaa: 0.0 ± 0.0
Thr
5.062ThrAla: 5.062 ± 0.036
0.78ThrCys: 0.78 ± 0.014
2.926ThrAsp: 2.926 ± 0.025
3.449ThrGlu: 3.449 ± 0.034
2.273ThrPhe: 2.273 ± 0.018
4.197ThrGly: 4.197 ± 0.031
1.204ThrHis: 1.204 ± 0.015
3.671ThrIle: 3.671 ± 0.031
3.119ThrLys: 3.119 ± 0.024
5.15ThrLeu: 5.15 ± 0.034
1.101ThrMet: 1.101 ± 0.013
2.439ThrAsn: 2.439 ± 0.025
4.811ThrPro: 4.811 ± 0.042
2.043ThrGln: 2.043 ± 0.02
3.078ThrArg: 3.078 ± 0.023
5.983ThrSer: 5.983 ± 0.076
5.75ThrThr: 5.75 ± 0.097
3.851ThrVal: 3.851 ± 0.034
0.792ThrTrp: 0.792 ± 0.012
1.694ThrTyr: 1.694 ± 0.019
0.0ThrXaa: 0.0 ± 0.0
Val
4.549ValAla: 4.549 ± 0.034
0.764ValCys: 0.764 ± 0.012
3.527ValAsp: 3.527 ± 0.028
4.231ValGlu: 4.231 ± 0.038
2.311ValPhe: 2.311 ± 0.021
3.856ValGly: 3.856 ± 0.028
1.201ValHis: 1.201 ± 0.014
3.088ValIle: 3.088 ± 0.029
3.242ValLys: 3.242 ± 0.023
5.08ValLeu: 5.08 ± 0.038
1.193ValMet: 1.193 ± 0.015
2.296ValAsn: 2.296 ± 0.025
3.504ValPro: 3.504 ± 0.032
2.124ValGln: 2.124 ± 0.017
3.085ValArg: 3.085 ± 0.023
4.447ValSer: 4.447 ± 0.032
3.598ValThr: 3.598 ± 0.033
4.165ValVal: 4.165 ± 0.038
0.807ValTrp: 0.807 ± 0.013
1.736ValTyr: 1.736 ± 0.019
0.0ValXaa: 0.0 ± 0.0
Trp
0.938TrpAla: 0.938 ± 0.013
0.19TrpCys: 0.19 ± 0.006
0.909TrpAsp: 0.909 ± 0.015
0.886TrpGlu: 0.886 ± 0.014
0.531TrpPhe: 0.531 ± 0.012
0.952TrpGly: 0.952 ± 0.013
0.296TrpHis: 0.296 ± 0.009
0.732TrpIle: 0.732 ± 0.012
0.872TrpLys: 0.872 ± 0.013
1.165TrpLeu: 1.165 ± 0.016
0.34TrpMet: 0.34 ± 0.008
0.638TrpAsn: 0.638 ± 0.012
0.527TrpPro: 0.527 ± 0.01
0.488TrpGln: 0.488 ± 0.01
0.855TrpArg: 0.855 ± 0.013
0.956TrpSer: 0.956 ± 0.013
0.798TrpThr: 0.798 ± 0.013
0.844TrpVal: 0.844 ± 0.013
0.274TrpTrp: 0.274 ± 0.007
0.438TrpTyr: 0.438 ± 0.009
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.944TyrAla: 1.944 ± 0.019
0.447TyrCys: 0.447 ± 0.009
1.797TyrAsp: 1.797 ± 0.02
1.719TyrGlu: 1.719 ± 0.017
1.266TyrPhe: 1.266 ± 0.017
2.147TyrGly: 2.147 ± 0.025
0.756TyrHis: 0.756 ± 0.012
1.605TyrIle: 1.605 ± 0.018
1.38TyrLys: 1.38 ± 0.016
2.727TyrLeu: 2.727 ± 0.024
0.584TyrMet: 0.584 ± 0.01
1.339TyrAsn: 1.339 ± 0.017
1.593TyrPro: 1.593 ± 0.019
1.179TyrGln: 1.179 ± 0.016
1.624TyrArg: 1.624 ± 0.015
2.218TyrSer: 2.218 ± 0.023
1.795TyrThr: 1.795 ± 0.022
1.543TyrVal: 1.543 ± 0.019
0.442TyrTrp: 0.442 ± 0.009
1.046TyrTyr: 1.046 ± 0.016
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 11478 proteins (5722854 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski