Sphingobacterium wenxiniae

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3412 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I6Q3Y3|A0A1I6Q3Y3_9SPHI Starch-binding associating with outer membrane OS=Sphingobacterium wenxiniae OX=683125 GN=SAMN05660206_102103 PE=3 SV=1
MM1 pKa = 7.48KK2 pKa = 10.11KK3 pKa = 9.56IRR5 pKa = 11.84YY6 pKa = 8.81ILISLHH12 pKa = 6.8LVLLLLGGISSLHH25 pKa = 5.58AQCVDD30 pKa = 3.24NTGLIAFTGYY40 pKa = 10.55QIADD44 pKa = 3.28AGNPQGQSDD53 pKa = 3.92RR54 pKa = 11.84FSFVTLDD61 pKa = 3.9SIPPNTPIRR70 pKa = 11.84FTDD73 pKa = 3.09RR74 pKa = 11.84GFTGGSSFQDD84 pKa = 3.31FGNALTDD91 pKa = 4.65GDD93 pKa = 4.85FSWSDD98 pKa = 3.27ASGISPGTHH107 pKa = 4.49IVVTLGSGTATSTIGSITGYY127 pKa = 10.4LGNFNLGLSGDD138 pKa = 3.77QIFAYY143 pKa = 8.62TASPSFKK150 pKa = 9.61IHH152 pKa = 6.73AAMLINKK159 pKa = 7.29SAWDD163 pKa = 3.76TEE165 pKa = 4.05MLEE168 pKa = 4.23LGNPIVTSSKK178 pKa = 10.78SLNPAIAPVRR188 pKa = 11.84QSITVYY194 pKa = 10.96NSTDD198 pKa = 3.23DD199 pKa = 4.07AFQAKK204 pKa = 9.85LNPITLTGSRR214 pKa = 11.84TALRR218 pKa = 11.84NQLFAGIFNIANSLNTDD235 pKa = 3.19AVNLSVSPLTWNASVPTYY253 pKa = 10.74TPISLNNKK261 pKa = 8.59ILSSTVTDD269 pKa = 2.99ACYY272 pKa = 10.24IQWQSSIDD280 pKa = 3.88GINFSNINDD289 pKa = 3.56GTAFSGTKK297 pKa = 8.68TASLTINTPLVADD310 pKa = 3.77TWFRR314 pKa = 11.84MHH316 pKa = 6.74LTGAAYY322 pKa = 8.48TVTDD326 pKa = 5.33AIKK329 pKa = 9.35LTLPAVTAHH338 pKa = 6.77PLNRR342 pKa = 11.84SICVGEE348 pKa = 3.94NTSFSVTATGTDD360 pKa = 3.66LQYY363 pKa = 11.02QWQEE367 pKa = 3.73DD368 pKa = 3.85RR369 pKa = 11.84GSGFTDD375 pKa = 3.89LSDD378 pKa = 3.35GGVYY382 pKa = 10.41SGVTTSTLNISGATAGMDD400 pKa = 3.95GYY402 pKa = 10.37QYY404 pKa = 10.81RR405 pKa = 11.84VRR407 pKa = 11.84VYY409 pKa = 10.91SSIANPVTSNSATLSVSNIQATISKK434 pKa = 9.15TDD436 pKa = 3.21VGCFGEE442 pKa = 4.44ASGSATVSNVMGGIGSYY459 pKa = 8.9TYY461 pKa = 10.33SWVRR465 pKa = 11.84QGTTDD470 pKa = 3.92IISDD474 pKa = 3.85TEE476 pKa = 4.23TASGLTEE483 pKa = 3.7GTYY486 pKa = 10.1TVTIRR491 pKa = 11.84DD492 pKa = 3.72AIGCVKK498 pKa = 9.68TLDD501 pKa = 4.03VIIMQPSALTASTTQTNVSCFNGSNGTATVSVSGGTGPYY540 pKa = 8.7TYY542 pKa = 10.73SWLPSGGTSQTATGLSAGTYY562 pKa = 7.78TVTVTDD568 pKa = 4.67ANSCQITRR576 pKa = 11.84SFTITHH582 pKa = 7.15PPALMASDD590 pKa = 3.96GGKK593 pKa = 8.73TNVSCNGGSNGTATVNVVGGTGAYY617 pKa = 8.11TYY619 pKa = 9.18TYY621 pKa = 9.87SWAPFGGTSQTATGLSAGLYY641 pKa = 8.09TVTVTDD647 pKa = 4.59ANGCQTTQNFEE658 pKa = 3.77ISEE661 pKa = 4.22PTSAVVITTSDD672 pKa = 2.93IMHH675 pKa = 6.66VSTVGGSDD683 pKa = 3.21GSATVDD689 pKa = 3.36VMGGTAPYY697 pKa = 8.8TYY699 pKa = 10.06SWSPTGGTGATATGLSAGVYY719 pKa = 8.4TVTVTDD725 pKa = 5.15ANTCTYY731 pKa = 9.51SHH733 pKa = 6.68NVTIEE738 pKa = 3.91QQAVNQAPVISNLNGDD754 pKa = 3.63AVTFTEE760 pKa = 5.2DD761 pKa = 3.25GPAVLLDD768 pKa = 3.45VFGNATVSDD777 pKa = 4.37PDD779 pKa = 3.74SPDD782 pKa = 3.38FNEE785 pKa = 4.23GNLTVSIVTNGVAAEE800 pKa = 4.0DD801 pKa = 3.6RR802 pKa = 11.84LGIRR806 pKa = 11.84HH807 pKa = 6.3EE808 pKa = 4.5GSGPGLIDD816 pKa = 3.31VAGGDD821 pKa = 3.8VYY823 pKa = 11.64YY824 pKa = 10.75GGTPIGSLTGGIAGQDD840 pKa = 3.25LVVTFLPNSTPAAAQALIRR859 pKa = 11.84NLTYY863 pKa = 11.39SNVNTGNPSSAPRR876 pKa = 11.84TVYY879 pKa = 8.89ITLSDD884 pKa = 3.78GDD886 pKa = 4.25GGTSAVQAVTVSIKK900 pKa = 9.55TVNDD904 pKa = 3.28APTISVPVQINVTEE918 pKa = 4.25DD919 pKa = 3.35VPVALTGITFYY930 pKa = 11.22DD931 pKa = 3.45VDD933 pKa = 3.92NTDD936 pKa = 2.92VTVTFRR942 pKa = 11.84TTIAGAGSGTLTATSTADD960 pKa = 3.33VTVSGSGTNEE970 pKa = 3.43LTMAGPWASINNLIAANGLVFLTDD994 pKa = 3.32QDD996 pKa = 3.8NVNTVFLNIQVSDD1009 pKa = 3.83GALADD1014 pKa = 3.73STATSLIVAAVNDD1027 pKa = 4.09APQISVPLLQTVLQDD1042 pKa = 3.25ATLTFNAANGNPISISDD1059 pKa = 3.58VDD1061 pKa = 4.34AGTNPIKK1068 pKa = 11.01LNLTTTRR1075 pKa = 11.84GLLSLGSTNGLSFDD1089 pKa = 4.28IGNGTADD1096 pKa = 3.18NTMEE1100 pKa = 4.25FTGTLADD1107 pKa = 4.31INAALNGLAFEE1118 pKa = 4.55PTGGYY1123 pKa = 9.51YY1124 pKa = 10.57GPAAINITADD1134 pKa = 3.51DD1135 pKa = 3.77QGATGAGGPKK1145 pKa = 9.87SVTRR1149 pKa = 11.84EE1150 pKa = 3.47IPITVEE1156 pKa = 3.45PLNPKK1161 pKa = 7.98VTSVSASTADD1171 pKa = 3.65GLYY1174 pKa = 10.64KK1175 pKa = 10.38ADD1177 pKa = 4.61DD1178 pKa = 4.59VITLTVTFNQNVVVNTNGGDD1198 pKa = 3.57TPTLLLEE1205 pKa = 4.11TGIIDD1210 pKa = 4.16RR1211 pKa = 11.84SAIYY1215 pKa = 9.77MGGSGSNTLTFIYY1228 pKa = 9.41TVQPGDD1234 pKa = 3.3VSADD1238 pKa = 3.35LDD1240 pKa = 4.13YY1241 pKa = 11.8VSISALSLNGATILSSYY1258 pKa = 10.51NGANAVLTLPTVGGASSIAGQKK1280 pKa = 10.51NIVIDD1285 pKa = 4.54GIVPVVNAVAVPANAYY1301 pKa = 9.63YY1302 pKa = 10.94GSGDD1306 pKa = 3.3QLYY1309 pKa = 7.98FTVEE1313 pKa = 3.92FSEE1316 pKa = 4.38AVAVNTTGGSPALSLTIGSQTVSAQYY1342 pKa = 9.05LTEE1345 pKa = 4.36SSTTTDD1351 pKa = 3.19LLFRR1355 pKa = 11.84YY1356 pKa = 9.27SVAAGMQDD1364 pKa = 2.72HH1365 pKa = 7.46DD1366 pKa = 4.9GIEE1369 pKa = 4.07IGTLSLNGATIRR1381 pKa = 11.84DD1382 pKa = 3.65AAGNDD1387 pKa = 3.48AVLTLNNVGATTHH1400 pKa = 5.63VKK1402 pKa = 10.04VDD1404 pKa = 3.36AKK1406 pKa = 11.08SPVVTMTINGGATHH1420 pKa = 6.53TNDD1423 pKa = 3.65RR1424 pKa = 11.84NVTLTLTTADD1434 pKa = 3.33TDD1436 pKa = 3.87VATMSFMNSPIFFPGSGASQPEE1458 pKa = 4.03PFAPTKK1464 pKa = 10.3AWQLTAGDD1472 pKa = 3.69GMKK1475 pKa = 9.97FVSGIVIDD1483 pKa = 4.04GAGNLTSVLAVITLDD1498 pKa = 3.1QTAPIVTGVDD1508 pKa = 2.82EE1509 pKa = 4.88GEE1511 pKa = 4.48SYY1513 pKa = 9.37NTDD1516 pKa = 2.8RR1517 pKa = 11.84TITFNEE1523 pKa = 4.26GTATLNGATFISGTTVSQDD1542 pKa = 2.77GAYY1545 pKa = 9.12TLIVTDD1551 pKa = 3.64EE1552 pKa = 4.75AGNSTTLSFAIDD1564 pKa = 3.35QTAPAVPAGLTATPDD1579 pKa = 3.14AGNINLQWTANQEE1592 pKa = 3.93ADD1594 pKa = 3.18LAAYY1598 pKa = 10.09RR1599 pKa = 11.84LYY1601 pKa = 11.0SGTAADD1607 pKa = 4.0QLSVLADD1614 pKa = 3.65IPAGTTTYY1622 pKa = 9.45THH1624 pKa = 6.96GPLTMGQRR1632 pKa = 11.84YY1633 pKa = 9.05YY1634 pKa = 11.24YY1635 pKa = 10.52AITAIDD1641 pKa = 3.5ALGNEE1646 pKa = 4.75SAQSVVVDD1654 pKa = 5.08ALPQDD1659 pKa = 3.76TQTITFGTLNDD1670 pKa = 3.75MTYY1673 pKa = 11.38GDD1675 pKa = 4.77APFALTATTTSGLTVAYY1692 pKa = 9.92SSSDD1696 pKa = 3.26NSIASIAGDD1705 pKa = 3.51VLTIHH1710 pKa = 6.18QAGDD1714 pKa = 3.54VVITASQNGNNAFLAATPVTQALHH1738 pKa = 5.9INKK1741 pKa = 9.57ADD1743 pKa = 3.68FAGITFDD1750 pKa = 5.28DD1751 pKa = 3.86KK1752 pKa = 11.26TVTYY1756 pKa = 10.19DD1757 pKa = 3.76GSAHH1761 pKa = 6.8SIFVSNAPTDD1771 pKa = 3.39ATVIYY1776 pKa = 9.97TNNNQINAGTYY1787 pKa = 7.96TVMATVSQANYY1798 pKa = 10.5NDD1800 pKa = 4.14LPLTAEE1806 pKa = 4.12LTIEE1810 pKa = 4.16KK1811 pKa = 10.35ADD1813 pKa = 3.72FAGITFNDD1821 pKa = 3.25ATVTYY1826 pKa = 9.67DD1827 pKa = 3.8GSAHH1831 pKa = 6.51SIAVANTPTGATITYY1846 pKa = 9.54VGNAQINAGTYY1857 pKa = 6.69TVRR1860 pKa = 11.84ATVSQANYY1868 pKa = 10.1NDD1870 pKa = 3.87LVLTAEE1876 pKa = 4.31LEE1878 pKa = 4.07ITKK1881 pKa = 10.97AMLTDD1886 pKa = 3.23IALRR1890 pKa = 11.84NNSFVYY1896 pKa = 10.57DD1897 pKa = 4.04GNAKK1901 pKa = 10.08SLEE1904 pKa = 3.95ISGILPTGVQVIYY1917 pKa = 10.17TGNNQVNAGMYY1928 pKa = 8.74TVVAEE1933 pKa = 4.36IADD1936 pKa = 4.34TQNHH1940 pKa = 5.42TGLRR1944 pKa = 11.84LEE1946 pKa = 4.73AQLQIDD1952 pKa = 4.62KK1953 pKa = 10.8APQTITFTSPGMLGRR1968 pKa = 11.84DD1969 pKa = 3.64AGTVALDD1976 pKa = 3.33VRR1978 pKa = 11.84SDD1980 pKa = 3.24SGLPVSLSVDD1990 pKa = 3.27DD1991 pKa = 5.43DD1992 pKa = 3.78MVGRR1996 pKa = 11.84IEE1998 pKa = 4.17GLNLEE2003 pKa = 4.29ILRR2006 pKa = 11.84LGTVTVTAIQPGNGNYY2022 pKa = 8.47EE2023 pKa = 3.79AAEE2026 pKa = 3.97PVSFSVRR2033 pKa = 11.84VANDD2037 pKa = 2.79ATAAVPIRR2045 pKa = 11.84VHH2047 pKa = 5.9QAVSPNGDD2055 pKa = 3.81GINDD2059 pKa = 3.82FLMMEE2064 pKa = 5.35GILDD2068 pKa = 3.73YY2069 pKa = 11.02PEE2071 pKa = 4.26NKK2073 pKa = 8.16VTIFDD2078 pKa = 3.82KK2079 pKa = 10.61SGKK2082 pKa = 9.83VIDD2085 pKa = 5.03VIEE2088 pKa = 4.52SYY2090 pKa = 11.44NNRR2093 pKa = 11.84DD2094 pKa = 3.13RR2095 pKa = 11.84VFTGQFVNDD2104 pKa = 3.69GTYY2107 pKa = 10.64YY2108 pKa = 10.88YY2109 pKa = 10.78YY2110 pKa = 10.15IDD2112 pKa = 3.96VKK2114 pKa = 11.23DD2115 pKa = 3.51GGVWKK2120 pKa = 10.22RR2121 pKa = 11.84EE2122 pKa = 3.58KK2123 pKa = 11.03GFFVVKK2129 pKa = 10.55RR2130 pKa = 11.84SVNN2133 pKa = 3.26

Molecular weight: 220.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I6NV61|A0A1I6NV61_9SPHI De-hypoxanthine futalosine cyclase OS=Sphingobacterium wenxiniae OX=683125 GN=SAMN05660206_101117 PE=4 SV=1
MM1 pKa = 7.29YY2 pKa = 10.36NGSLVMSFRR11 pKa = 11.84PLVMNIGSLVMSIRR25 pKa = 11.84SLVMSIRR32 pKa = 11.84PLVMSIRR39 pKa = 11.84PLVMSFRR46 pKa = 11.84LLVMSFRR53 pKa = 11.84PLVMSIRR60 pKa = 11.84SLVMSIRR67 pKa = 11.84SLVMSIRR74 pKa = 11.84LLVMSIRR81 pKa = 11.84PLVMSFRR88 pKa = 11.84PLVMNIGSLVMNIRR102 pKa = 11.84PLLMHH107 pKa = 6.63IGKK110 pKa = 8.87WLLTEE115 pKa = 4.15KK116 pKa = 10.9

Molecular weight: 13.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3412

0

3412

1141595

14

3684

334.6

37.72

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.082 ± 0.043

0.739 ± 0.014

5.482 ± 0.029

6.483 ± 0.045

4.912 ± 0.032

6.709 ± 0.043

1.982 ± 0.022

7.266 ± 0.038

6.704 ± 0.045

9.51 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.32 ± 0.019

5.317 ± 0.04

3.565 ± 0.021

4.019 ± 0.027

4.232 ± 0.028

6.201 ± 0.03

5.581 ± 0.043

6.529 ± 0.035

1.155 ± 0.017

4.213 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski