Fringilla coelebs papillomavirus (isolate Chaffinch/Netherlands/Dutch) (FcPV)

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Etapapillomavirus; Etapapillomavirus 1

Average proteome isoelectric point is 6.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q8JNA7|Q8JNA7_FCPVN Putative E7 protein OS=Fringilla coelebs papillomavirus (isolate Chaffinch/Netherlands/Dutch) OX=654914 GN=E7 PE=4 SV=1
MM1 pKa = 8.06RR2 pKa = 11.84NRR4 pKa = 11.84LPIGAQGPPGGQPSNNPSEE23 pKa = 5.26NNFNPEE29 pKa = 3.8DD30 pKa = 3.88WDD32 pKa = 3.67ILLDD36 pKa = 3.8TDD38 pKa = 4.1SSSGSEE44 pKa = 4.21TEE46 pKa = 4.09TAEE49 pKa = 3.98ATSPSSSEE57 pKa = 3.72EE58 pKa = 3.77SAEE61 pKa = 3.96FDD63 pKa = 3.55WEE65 pKa = 4.22VKK67 pKa = 10.78LIVTGNSQDD76 pKa = 4.34PITLQEE82 pKa = 4.77LEE84 pKa = 5.1DD85 pKa = 4.12LNQVLVAEE93 pKa = 5.25LGHH96 pKa = 6.87PATVYY101 pKa = 10.56SIQDD105 pKa = 3.39QADD108 pKa = 3.88GASYY112 pKa = 10.38PPGSPTPSTSTFPFEE127 pKa = 4.29TPQGNNQFTSMAVAGSSAAADD148 pKa = 3.75PPSFPSPASVVDD160 pKa = 4.68LVCHH164 pKa = 6.35EE165 pKa = 4.65SMGDD169 pKa = 3.25SDD171 pKa = 4.1VDD173 pKa = 3.99EE174 pKa = 5.24EE175 pKa = 4.34EE176 pKa = 4.76HH177 pKa = 7.2LPNNPANTPEE187 pKa = 3.86EE188 pKa = 4.27SGANDD193 pKa = 3.59TEE195 pKa = 4.89FKK197 pKa = 10.35CTICSKK203 pKa = 10.35PLTEE207 pKa = 5.31GEE209 pKa = 3.91LDD211 pKa = 3.07EE212 pKa = 4.79WGLVQGDD219 pKa = 3.5EE220 pKa = 4.58GLCHH224 pKa = 6.49FCGFGAGVVDD234 pKa = 5.76FFPP237 pKa = 5.61

Molecular weight: 25.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q8JNA6|Q8JNA6_FCPVN Putative replication protein E1 OS=Fringilla coelebs papillomavirus (isolate Chaffinch/Netherlands/Dutch) OX=654914 GN=E1 PE=4 SV=1
MM1 pKa = 7.48EE2 pKa = 5.89LSNPQGLPQTDD13 pKa = 3.46RR14 pKa = 11.84CIGSCCSSNSSSSGMRR30 pKa = 11.84LTLFCGSWCKK40 pKa = 10.52VVAIGNGGHH49 pKa = 7.5LPRR52 pKa = 11.84IPMTQLLISTISRR65 pKa = 11.84AQCRR69 pKa = 11.84KK70 pKa = 9.5LCTAAPYY77 pKa = 10.71LFLKK81 pKa = 10.43QCVCIHH87 pKa = 6.77RR88 pKa = 11.84MHH90 pKa = 7.02CLLPIFSQLKK100 pKa = 9.3RR101 pKa = 11.84ICAGLPPEE109 pKa = 4.46GWLGTVADD117 pKa = 4.63KK118 pKa = 10.5LTMFICQMQNEE129 pKa = 4.64CLKK132 pKa = 10.18HH133 pKa = 5.74YY134 pKa = 9.92PYY136 pKa = 9.15EE137 pKa = 3.98TLEE140 pKa = 3.64IVMPYY145 pKa = 8.58TALRR149 pKa = 11.84EE150 pKa = 4.39LYY152 pKa = 10.65SHH154 pKa = 6.94LQLTASQRR162 pKa = 11.84RR163 pKa = 11.84TKK165 pKa = 10.73VSLILRR171 pKa = 11.84DD172 pKa = 3.32IRR174 pKa = 11.84HH175 pKa = 5.7CQLVRR180 pKa = 11.84EE181 pKa = 4.82SKK183 pKa = 9.77HH184 pKa = 3.94QARR187 pKa = 11.84GRR189 pKa = 11.84KK190 pKa = 7.61DD191 pKa = 2.89HH192 pKa = 7.08RR193 pKa = 11.84NYY195 pKa = 10.52FNAAA199 pKa = 3.23

Molecular weight: 22.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2540

199

694

423.3

47.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.535 ± 0.366

2.047 ± 0.548

5.906 ± 0.338

6.339 ± 0.527

3.386 ± 0.36

7.205 ± 0.767

2.283 ± 0.387

4.291 ± 0.411

3.858 ± 0.87

8.583 ± 0.67

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.693 ± 0.176

4.409 ± 0.736

7.087 ± 0.936

4.173 ± 0.298

6.378 ± 0.767

8.543 ± 0.763

5.827 ± 0.221

6.535 ± 0.736

1.535 ± 0.122

3.386 ± 0.419
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski