Halovirus HGTV-1

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified archaeal dsDNA viruses; Haloviruses

Average proteome isoelectric point is 5.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 281 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R4T6P3|R4T6P3_9VIRU PD-(D/E)XK nuclease OS=Halovirus HGTV-1 OX=1273749 GN=39 PE=4 SV=1
MM1 pKa = 7.82AYY3 pKa = 10.16DD4 pKa = 3.71PQYY7 pKa = 11.78VSIDD11 pKa = 3.79DD12 pKa = 4.19VPVQIPDD19 pKa = 3.91DD20 pKa = 4.01YY21 pKa = 11.68SPSEE25 pKa = 4.21KK26 pKa = 10.28EE27 pKa = 3.96DD28 pKa = 3.35ALEE31 pKa = 3.88YY32 pKa = 11.26AEE34 pKa = 5.94ASLEE38 pKa = 4.14LDD40 pKa = 4.29LNDD43 pKa = 4.01GAAIPSGSVSAMMKK57 pKa = 10.37AAVKK61 pKa = 10.2QLATCQLAKK70 pKa = 10.45GAEE73 pKa = 4.18HH74 pKa = 7.47PDD76 pKa = 4.48DD77 pKa = 3.72ITLGDD82 pKa = 4.42LNDD85 pKa = 3.93TGDD88 pKa = 3.77TKK90 pKa = 11.12VSYY93 pKa = 11.08AEE95 pKa = 4.31SFCDD99 pKa = 3.67EE100 pKa = 4.3YY101 pKa = 11.58EE102 pKa = 4.52KK103 pKa = 10.82IVDD106 pKa = 3.62KK107 pKa = 11.02LVNSGALEE115 pKa = 4.13DD116 pKa = 4.9LEE118 pKa = 5.99PDD120 pKa = 3.76GQSTSPYY127 pKa = 10.34VYY129 pKa = 9.7NTDD132 pKa = 4.24DD133 pKa = 3.76PTPGNRR139 pKa = 11.84WSS141 pKa = 3.31

Molecular weight: 15.23 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R4TGP3|R4TGP3_9VIRU Uncharacterized protein OS=Halovirus HGTV-1 OX=1273749 GN=99 PE=4 SV=1
MM1 pKa = 8.07RR2 pKa = 11.84DD3 pKa = 2.84RR4 pKa = 11.84GRR6 pKa = 11.84RR7 pKa = 11.84RR8 pKa = 11.84SVRR11 pKa = 11.84IGSVRR16 pKa = 11.84IVGGTSSGIGGLSITGFRR34 pKa = 11.84LLVQRR39 pKa = 11.84RR40 pKa = 11.84IGFTSFAIIVSLRR53 pKa = 11.84RR54 pKa = 11.84TRR56 pKa = 11.84KK57 pKa = 9.38FEE59 pKa = 4.12SGNRR63 pKa = 11.84NLYY66 pKa = 8.38ITTTRR71 pKa = 11.84FQSVV75 pKa = 2.76

Molecular weight: 8.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

281

0

281

42727

26

983

152.1

17.18

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.956 ± 0.243

1.039 ± 0.085

8.21 ± 0.188

9.945 ± 0.284

3.824 ± 0.122

7.183 ± 0.163

2.263 ± 0.102

4.908 ± 0.12

4.517 ± 0.145

6.963 ± 0.16

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.881 ± 0.105

4.313 ± 0.113

3.803 ± 0.105

3.27 ± 0.091

5.549 ± 0.154

6.385 ± 0.154

5.547 ± 0.173

7.092 ± 0.138

1.533 ± 0.066

3.82 ± 0.133
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski