Ornithinimicrobium sp. AMA3305

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Ornithinimicrobiaceae; Ornithinimicrobium; unclassified Ornithinimicrobium

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3428 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A345NQA4|A0A345NQA4_9MICO Glutamyl-tRNA reductase OS=Ornithinimicrobium sp. AMA3305 OX=2283195 GN=hemA PE=3 SV=1
MM1 pKa = 7.64GGRR4 pKa = 11.84HH5 pKa = 5.77ARR7 pKa = 11.84TPRR10 pKa = 11.84LLASLLTLTLLAGCTFAGGDD30 pKa = 3.71GGAPTPTGTATQDD43 pKa = 3.05GFSTDD48 pKa = 3.53GPVTSTSTPDD58 pKa = 3.49ADD60 pKa = 3.73GAPAGLEE67 pKa = 3.96DD68 pKa = 5.84FYY70 pKa = 11.59GQQLEE75 pKa = 4.44WTDD78 pKa = 3.79CEE80 pKa = 5.12SLFEE84 pKa = 4.24CANLEE89 pKa = 4.26VPVDD93 pKa = 3.88YY94 pKa = 10.32EE95 pKa = 4.49DD96 pKa = 4.13PGGPTIEE103 pKa = 4.37LAVLRR108 pKa = 11.84AGASGEE114 pKa = 4.14PQGSLVVNPGGPGASGVDD132 pKa = 3.6YY133 pKa = 11.61AMMAGAVVSRR143 pKa = 11.84EE144 pKa = 3.4VRR146 pKa = 11.84AAYY149 pKa = 9.95DD150 pKa = 3.35VVGFDD155 pKa = 3.51PRR157 pKa = 11.84GVARR161 pKa = 11.84SAPITCFTDD170 pKa = 3.21EE171 pKa = 5.03QMDD174 pKa = 4.1TFLGTDD180 pKa = 4.47PSPDD184 pKa = 3.41DD185 pKa = 3.84PAEE188 pKa = 3.94EE189 pKa = 3.79RR190 pKa = 11.84AVEE193 pKa = 4.36GEE195 pKa = 4.36LKK197 pKa = 10.82DD198 pKa = 3.71FAQACEE204 pKa = 4.21TNAGDD209 pKa = 4.51LLGHH213 pKa = 6.23VSTVEE218 pKa = 3.53AAKK221 pKa = 11.19DD222 pKa = 3.53MDD224 pKa = 4.16VLRR227 pKa = 11.84AALGEE232 pKa = 3.93PRR234 pKa = 11.84LTYY237 pKa = 10.74LGASYY242 pKa = 8.37GTFLGTTYY250 pKa = 10.29ATLFPDD256 pKa = 3.18RR257 pKa = 11.84VGRR260 pKa = 11.84LVLDD264 pKa = 4.16GAIDD268 pKa = 3.63PTLTGLEE275 pKa = 4.12MGLGQAAGFEE285 pKa = 4.47RR286 pKa = 11.84ATRR289 pKa = 11.84AYY291 pKa = 10.72VEE293 pKa = 4.19NCVGGGSCPLGDD305 pKa = 4.8DD306 pKa = 3.44VDD308 pKa = 4.09TAMVAIPAFLDD319 pKa = 3.59EE320 pKa = 4.74VDD322 pKa = 3.68AHH324 pKa = 6.55PLPVSGDD331 pKa = 3.42TVTEE335 pKa = 4.15LTEE338 pKa = 3.88GWAMLGIIVAMYY350 pKa = 10.26SQDD353 pKa = 2.49IWPILTQALGRR364 pKa = 11.84AQQGDD369 pKa = 3.83GTLLMFLANSYY380 pKa = 11.07ASRR383 pKa = 11.84HH384 pKa = 5.28SDD386 pKa = 2.72GTYY389 pKa = 9.75TGNGMQAIYY398 pKa = 10.47AVNCLDD404 pKa = 3.73RR405 pKa = 11.84PADD408 pKa = 3.93EE409 pKa = 6.21GPDD412 pKa = 3.5LDD414 pKa = 3.94SAAVEE419 pKa = 4.31EE420 pKa = 4.37QFEE423 pKa = 4.4AASPTWGRR431 pKa = 11.84YY432 pKa = 7.51LAGDD436 pKa = 4.56GACEE440 pKa = 3.91YY441 pKa = 9.96WPVHH445 pKa = 6.52AEE447 pKa = 3.8QTLQDD452 pKa = 3.94YY453 pKa = 9.64SAQGAAPIVVIGTTRR468 pKa = 11.84DD469 pKa = 3.08PATPYY474 pKa = 10.19EE475 pKa = 4.15WAEE478 pKa = 3.9ALADD482 pKa = 3.72ILDD485 pKa = 4.04SGVLISYY492 pKa = 10.54DD493 pKa = 3.73GDD495 pKa = 3.21GHH497 pKa = 5.16TAYY500 pKa = 10.16GRR502 pKa = 11.84SNDD505 pKa = 3.98CVDD508 pKa = 4.3DD509 pKa = 4.84AVDD512 pKa = 3.93AYY514 pKa = 10.93LLEE517 pKa = 4.55GTVPQDD523 pKa = 3.9GLRR526 pKa = 11.84CC527 pKa = 3.91

Molecular weight: 54.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A345NP23|A0A345NP23_9MICO DUF721 domain-containing protein OS=Ornithinimicrobium sp. AMA3305 OX=2283195 GN=DV701_12205 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84ARR15 pKa = 11.84KK16 pKa = 8.65HH17 pKa = 4.47GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILAARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.65GRR40 pKa = 11.84SALSAA45 pKa = 3.8

Molecular weight: 5.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3428

0

3428

1146953

32

3005

334.6

35.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.048 ± 0.053

0.655 ± 0.01

6.256 ± 0.041

5.922 ± 0.038

2.472 ± 0.026

9.636 ± 0.035

2.31 ± 0.021

2.861 ± 0.035

1.497 ± 0.026

10.656 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.867 ± 0.019

1.412 ± 0.021

5.823 ± 0.033

3.048 ± 0.022

8.12 ± 0.052

5.0 ± 0.026

6.044 ± 0.029

9.924 ± 0.043

1.605 ± 0.019

1.843 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski