Salinivibrio phage CW02

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Zobellviridae; Salinovirus; Salinivibrio virus CW02

Average proteome isoelectric point is 5.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 70 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H9D1I7|H9D1I7_9CAUD Uncharacterized protein OS=Salinivibrio phage CW02 OX=1161935 PE=4 SV=1
MM1 pKa = 7.79LDD3 pKa = 4.82KK4 pKa = 10.94IMCYY8 pKa = 10.31LLALFPVFAAITLYY22 pKa = 10.13MGWPGEE28 pKa = 4.19LILWYY33 pKa = 9.63CVPIGLVVVVAEE45 pKa = 4.54VYY47 pKa = 10.89DD48 pKa = 5.37LITVDD53 pKa = 3.78PDD55 pKa = 3.5DD56 pKa = 4.52YY57 pKa = 11.5EE58 pKa = 4.01

Molecular weight: 6.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H9D1G6|H9D1G6_9CAUD Uncharacterized protein OS=Salinivibrio phage CW02 OX=1161935 PE=4 SV=1
MM1 pKa = 7.45GIEE4 pKa = 4.27VAVGAAIVGSITTGVMAYY22 pKa = 9.83KK23 pKa = 10.31SYY25 pKa = 11.26KK26 pKa = 7.21EE27 pKa = 3.85QKK29 pKa = 9.7KK30 pKa = 9.66AANIQRR36 pKa = 11.84EE37 pKa = 3.99QAKK40 pKa = 8.79QQEE43 pKa = 4.75AVNEE47 pKa = 4.16AQASQQRR54 pKa = 11.84QSAARR59 pKa = 11.84EE60 pKa = 3.82RR61 pKa = 11.84RR62 pKa = 11.84LKK64 pKa = 10.19RR65 pKa = 11.84ARR67 pKa = 11.84ILQRR71 pKa = 11.84AQAMGITGSSAVGQGQNALASGQDD95 pKa = 3.43TMGSQQGFATAVAAGRR111 pKa = 11.84SEE113 pKa = 4.31TNQALANTQSNINRR127 pKa = 11.84FNTIGKK133 pKa = 9.55LGGLATQMGMSYY145 pKa = 11.31AKK147 pKa = 10.54GKK149 pKa = 10.15VSQGG153 pKa = 3.08

Molecular weight: 16.01 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

70

0

70

15166

58

1413

216.7

24.28

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.24 ± 0.495

1.068 ± 0.171

6.515 ± 0.272

7.701 ± 0.27

3.686 ± 0.203

7.543 ± 0.295

1.853 ± 0.152

4.846 ± 0.178

6.6 ± 0.328

8.209 ± 0.271

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.585 ± 0.155

4.787 ± 0.203

3.613 ± 0.182

3.877 ± 0.331

5.077 ± 0.271

6.805 ± 0.353

5.486 ± 0.218

7.339 ± 0.206

1.444 ± 0.118

3.725 ± 0.178
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski