Corynebacterium canis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 6.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2534 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C5UG16|A0A5C5UG16_9CORY Acyl-CoA thioesterase II OS=Corynebacterium canis OX=679663 GN=FRX94_07710 PE=3 SV=1
MM1 pKa = 7.58NEE3 pKa = 3.78TEE5 pKa = 4.64ALQEE9 pKa = 4.03PATDD13 pKa = 3.04VSFAVTVCRR22 pKa = 11.84VPSGAWYY29 pKa = 10.04VVGMDD34 pKa = 4.0TDD36 pKa = 4.11FSDD39 pKa = 4.98IEE41 pKa = 4.25DD42 pKa = 4.05TVRR45 pKa = 11.84KK46 pKa = 9.02AQAICEE52 pKa = 4.13HH53 pKa = 6.05GQVFTMSCVDD63 pKa = 2.88EE64 pKa = 5.48DD65 pKa = 4.76YY66 pKa = 11.08FVLARR71 pKa = 11.84HH72 pKa = 5.6VGDD75 pKa = 3.5RR76 pKa = 11.84VEE78 pKa = 5.3LLLSDD83 pKa = 3.42ACMAVNDD90 pKa = 4.94PYY92 pKa = 11.24AASVLEE98 pKa = 4.15KK99 pKa = 10.24TGGCIPEE106 pKa = 4.8LGEE109 pKa = 5.15CDD111 pKa = 3.91FADD114 pKa = 4.34PCPEE118 pKa = 4.17GNPGLLADD126 pKa = 5.42LGLSADD132 pKa = 3.86TMRR135 pKa = 11.84AICNDD140 pKa = 3.07NDD142 pKa = 4.47LLPSAQLLCVAAEE155 pKa = 4.21LGFASEE161 pKa = 4.83FAQATDD167 pKa = 4.09LNLDD171 pKa = 3.42

Molecular weight: 18.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C5UDK9|A0A5C5UDK9_9CORY Rieske 2Fe-2S domain-containing protein OS=Corynebacterium canis OX=679663 GN=FRX94_09740 PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84VHH19 pKa = 5.99GFRR22 pKa = 11.84TRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIVSARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.57GRR42 pKa = 11.84ASLTVV47 pKa = 3.04

Molecular weight: 5.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2534

0

2534

838831

33

3008

331.0

35.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.828 ± 0.053

0.908 ± 0.014

5.591 ± 0.036

6.098 ± 0.049

3.416 ± 0.03

8.172 ± 0.044

2.275 ± 0.023

5.163 ± 0.037

3.006 ± 0.041

9.914 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.171 ± 0.022

2.727 ± 0.028

5.207 ± 0.042

3.412 ± 0.029

6.468 ± 0.051

5.48 ± 0.031

6.045 ± 0.039

8.442 ± 0.046

1.418 ± 0.02

2.259 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski