Vibrio virus VpV262

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Zobellviridae; Vipivirus

Average proteome isoelectric point is 5.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 67 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q8LT38|Q8LT38_9CAUD Uncharacterized protein OS=Vibrio virus VpV262 OX=194802 PE=4 SV=1
MM1 pKa = 7.55LVTGNGTFPLAQGANWSASALYY23 pKa = 9.99TDD25 pKa = 4.35ALGGATVQLQVNGVDD40 pKa = 3.98LVDD43 pKa = 4.95GALADD48 pKa = 3.53NTQYY52 pKa = 11.37VVTHH56 pKa = 6.19GKK58 pKa = 9.07RR59 pKa = 11.84AVVEE63 pKa = 4.36VVVTGYY69 pKa = 8.11TADD72 pKa = 3.85FNIWTYY78 pKa = 11.15DD79 pKa = 3.15ASS81 pKa = 3.6

Molecular weight: 8.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q8LT57|Q8LT57_9CAUD Uncharacterized protein OS=Vibrio virus VpV262 OX=194802 PE=4 SV=1
MM1 pKa = 7.26SKK3 pKa = 10.54AVRR6 pKa = 11.84FIGGAVQVIAGIYY19 pKa = 6.19TANPALIASGVGSIAGGIAEE39 pKa = 4.75QKK41 pKa = 10.54RR42 pKa = 11.84EE43 pKa = 4.05DD44 pKa = 3.6AAKK47 pKa = 10.37QAVQEE52 pKa = 3.93QRR54 pKa = 11.84KK55 pKa = 8.77AVAINNAQQAIQRR68 pKa = 11.84QRR70 pKa = 11.84QIRR73 pKa = 11.84QTIAEE78 pKa = 4.04ARR80 pKa = 11.84VRR82 pKa = 11.84RR83 pKa = 11.84ALIQSRR89 pKa = 11.84GFEE92 pKa = 4.34GGPAGAGDD100 pKa = 4.72SIYY103 pKa = 11.16GDD105 pKa = 3.43AASAIGAANTQQAAAFGISAARR127 pKa = 11.84NRR129 pKa = 11.84AAMFGLEE136 pKa = 3.97ARR138 pKa = 11.84SSNSFDD144 pKa = 3.52AFAGAANLFGQGYY157 pKa = 5.65TAYY160 pKa = 9.8KK161 pKa = 9.87GGSFEE166 pKa = 4.64GLFGSGTADD175 pKa = 3.12TGRR178 pKa = 11.84TSDD181 pKa = 4.46FGRR184 pKa = 11.84SGNNSANFLEE194 pKa = 4.61FGGAVSGGRR203 pKa = 3.44

Molecular weight: 20.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

67

0

67

14092

46

1536

210.3

23.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.501 ± 0.506

1.072 ± 0.178

7.245 ± 0.241

7.181 ± 0.296

3.655 ± 0.128

7.387 ± 0.384

2.25 ± 0.211

5.081 ± 0.179

5.954 ± 0.392

7.827 ± 0.254

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.824 ± 0.166

4.435 ± 0.254

3.626 ± 0.147

4.052 ± 0.282

5.23 ± 0.226

5.329 ± 0.183

6.209 ± 0.397

7.039 ± 0.27

1.476 ± 0.114

3.626 ± 0.204
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski