Agathobaculum butyriciproducens

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Oscillospiraceae; Agathobaculum

Average proteome isoelectric point is 6.19

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2545 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2U1BFX9|A0A2U1BFX9_9FIRM Uncharacterized protein OS=Agathobaculum butyriciproducens OX=1628085 GN=C7386_102158 PE=4 SV=1
MM1 pKa = 7.69EE2 pKa = 4.72EE3 pKa = 3.69MRR5 pKa = 11.84VYY7 pKa = 10.25IANLGKK13 pKa = 10.45YY14 pKa = 9.93NEE16 pKa = 4.62GEE18 pKa = 3.95LVGAWFEE25 pKa = 4.02PPIDD29 pKa = 3.75FDD31 pKa = 4.02EE32 pKa = 4.56VKK34 pKa = 10.65EE35 pKa = 4.16RR36 pKa = 11.84IGLNDD41 pKa = 3.13QYY43 pKa = 11.4EE44 pKa = 4.64EE45 pKa = 4.17YY46 pKa = 10.37AIHH49 pKa = 7.48DD50 pKa = 3.8FEE52 pKa = 5.92LPFEE56 pKa = 4.4IEE58 pKa = 4.13EE59 pKa = 4.01YY60 pKa = 10.75TPIEE64 pKa = 4.52EE65 pKa = 4.21INRR68 pKa = 11.84LCEE71 pKa = 3.99MVEE74 pKa = 4.25DD75 pKa = 4.12LPDD78 pKa = 3.88YY79 pKa = 10.97IRR81 pKa = 11.84DD82 pKa = 3.71NMGSLLSYY90 pKa = 10.6YY91 pKa = 10.67SGVEE95 pKa = 4.12DD96 pKa = 4.1FCEE99 pKa = 4.01HH100 pKa = 7.14ADD102 pKa = 6.15DD103 pKa = 5.28IILWSGCDD111 pKa = 3.15TTADD115 pKa = 3.43VAEE118 pKa = 4.06QMLDD122 pKa = 2.98EE123 pKa = 4.79GLISDD128 pKa = 3.87EE129 pKa = 3.88TLRR132 pKa = 11.84RR133 pKa = 11.84YY134 pKa = 9.7FDD136 pKa = 3.38SVQYY140 pKa = 11.03GRR142 pKa = 11.84DD143 pKa = 3.15LSMEE147 pKa = 4.11GDD149 pKa = 3.76FVEE152 pKa = 4.68TKK154 pKa = 10.74DD155 pKa = 4.43GVFEE159 pKa = 5.36LIRR162 pKa = 5.25

Molecular weight: 18.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2U1BDR0|A0A2U1BDR0_9FIRM Ribonuclease H OS=Agathobaculum butyriciproducens OX=1628085 GN=rnhA PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.6RR3 pKa = 11.84TFQPKK8 pKa = 8.85KK9 pKa = 7.62RR10 pKa = 11.84QRR12 pKa = 11.84SKK14 pKa = 9.69EE15 pKa = 3.5HH16 pKa = 6.14GFRR19 pKa = 11.84KK20 pKa = 9.99RR21 pKa = 11.84MSTSNGRR28 pKa = 11.84KK29 pKa = 8.23VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.49GRR39 pKa = 11.84AKK41 pKa = 10.69LSAA44 pKa = 3.92

Molecular weight: 5.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2545

0

2545

787198

27

3344

309.3

34.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.542 ± 0.054

1.632 ± 0.02

5.854 ± 0.041

6.63 ± 0.053

3.817 ± 0.036

7.427 ± 0.052

1.986 ± 0.028

6.071 ± 0.045

5.442 ± 0.042

9.252 ± 0.066

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.901 ± 0.025

3.741 ± 0.039

3.818 ± 0.028

3.491 ± 0.033

5.332 ± 0.055

5.612 ± 0.041

5.993 ± 0.061

7.031 ± 0.047

0.903 ± 0.015

3.522 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski