Gordonia phage Suerte

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nymbaxtervirinae; unclassified Nymbaxtervirinae

Average proteome isoelectric point is 6.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 74 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5P8DDD4|A0A5P8DDD4_9CAUD Helix-turn-helix DNA binding protein OS=Gordonia phage Suerte OX=2652883 GN=35 PE=4 SV=1
MM1 pKa = 7.11TAPEE5 pKa = 4.48RR6 pKa = 11.84MTPLASGVEE15 pKa = 4.07NGVRR19 pKa = 11.84WVTCVAPIYY28 pKa = 10.31GAVNGYY34 pKa = 9.27VLLPEE39 pKa = 3.98GHH41 pKa = 7.18PWRR44 pKa = 11.84GLDD47 pKa = 3.35YY48 pKa = 11.06DD49 pKa = 3.88QIDD52 pKa = 4.08VEE54 pKa = 4.55VHH56 pKa = 5.95GGLTYY61 pKa = 10.9GHH63 pKa = 7.31DD64 pKa = 3.15GWIGFDD70 pKa = 3.44TLHH73 pKa = 7.13AGDD76 pKa = 4.32VWPGSPQYY84 pKa = 10.73GGPRR88 pKa = 11.84PYY90 pKa = 11.42DD91 pKa = 3.48MRR93 pKa = 11.84WTAEE97 pKa = 3.92MVAEE101 pKa = 4.32EE102 pKa = 4.33ARR104 pKa = 11.84RR105 pKa = 11.84LAARR109 pKa = 11.84VAAAAEE115 pKa = 4.37TTDD118 pKa = 3.63TGPVSGPPYY127 pKa = 10.27PPDD130 pKa = 3.82RR131 pKa = 11.84VPDD134 pKa = 3.76DD135 pKa = 4.8HH136 pKa = 8.05DD137 pKa = 5.22DD138 pKa = 3.6GTMPTNVAEE147 pKa = 4.5FAEE150 pKa = 4.44QVVGRR155 pKa = 11.84RR156 pKa = 11.84IIKK159 pKa = 10.19AEE161 pKa = 3.85KK162 pKa = 9.13TDD164 pKa = 4.14FRR166 pKa = 11.84PEE168 pKa = 4.11DD169 pKa = 3.63FDD171 pKa = 4.21GTEE174 pKa = 3.61HH175 pKa = 6.72TYY177 pKa = 9.33WSSYY181 pKa = 10.55SDD183 pKa = 3.16THH185 pKa = 7.87GLVLTLDD192 pKa = 3.67DD193 pKa = 3.62GRR195 pKa = 11.84RR196 pKa = 11.84VVLVDD201 pKa = 3.84TSDD204 pKa = 3.51CCAYY208 pKa = 9.81TSLEE212 pKa = 4.01EE213 pKa = 4.45FFLHH217 pKa = 6.73PEE219 pKa = 4.11RR220 pKa = 11.84VDD222 pKa = 3.54HH223 pKa = 6.71VITGVATTDD232 pKa = 3.57GYY234 pKa = 10.89EE235 pKa = 3.94RR236 pKa = 11.84WHH238 pKa = 6.21VFADD242 pKa = 3.42LGDD245 pKa = 3.76ILEE248 pKa = 4.77LKK250 pKa = 10.3IGWSAGNPFYY260 pKa = 10.93YY261 pKa = 10.41GYY263 pKa = 10.5GFNIGVSNVIEE274 pKa = 4.5GSLAQPEE281 pKa = 4.53LEE283 pKa = 4.24QGQSS287 pKa = 2.93

Molecular weight: 31.62 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5P8DDH2|A0A5P8DDH2_9CAUD Tail assembly chaperone OS=Gordonia phage Suerte OX=2652883 GN=15 PE=4 SV=1
MM1 pKa = 7.59ARR3 pKa = 11.84PPLPLGTWGKK13 pKa = 8.09ITRR16 pKa = 11.84KK17 pKa = 7.83EE18 pKa = 4.03TAPGRR23 pKa = 11.84WRR25 pKa = 11.84ARR27 pKa = 11.84AQYY30 pKa = 10.63RR31 pKa = 11.84DD32 pKa = 3.45FDD34 pKa = 4.04GVTRR38 pKa = 11.84PVEE41 pKa = 4.1RR42 pKa = 11.84YY43 pKa = 8.93GKK45 pKa = 10.11SGAAAEE51 pKa = 4.2RR52 pKa = 11.84ALVEE56 pKa = 4.04ALRR59 pKa = 11.84DD60 pKa = 3.35RR61 pKa = 11.84AAARR65 pKa = 11.84GDD67 pKa = 3.48IINRR71 pKa = 11.84DD72 pKa = 3.34TTIAALATAWIASRR86 pKa = 11.84VAEE89 pKa = 4.3DD90 pKa = 3.47ALRR93 pKa = 11.84EE94 pKa = 3.98QSVEE98 pKa = 4.09QYY100 pKa = 10.59QSAIDD105 pKa = 3.64KK106 pKa = 10.6HH107 pKa = 6.23IVPALGRR114 pKa = 11.84VRR116 pKa = 11.84IGEE119 pKa = 4.26VGVGILDD126 pKa = 3.71RR127 pKa = 11.84FLEE130 pKa = 5.37GISSAAVAKK139 pKa = 9.94RR140 pKa = 11.84CRR142 pKa = 11.84VVLTGMFGLAARR154 pKa = 11.84HH155 pKa = 6.19DD156 pKa = 5.3AIDD159 pKa = 3.87HH160 pKa = 5.53NPVRR164 pKa = 11.84EE165 pKa = 4.24TVSRR169 pKa = 11.84AQKK172 pKa = 9.78RR173 pKa = 11.84IPVRR177 pKa = 11.84AMTVGEE183 pKa = 4.3VAVMRR188 pKa = 11.84ARR190 pKa = 11.84VAAWAGANASGPPRR204 pKa = 11.84GQDD207 pKa = 3.65LPDD210 pKa = 4.39ILDD213 pKa = 3.64AMLGTGARR221 pKa = 11.84IGEE224 pKa = 3.98VLAIRR229 pKa = 11.84KK230 pKa = 8.91EE231 pKa = 3.99DD232 pKa = 3.52LDD234 pKa = 4.2LRR236 pKa = 11.84SNPPTVVITGTIVGNKK252 pKa = 8.52RR253 pKa = 11.84QPAPKK258 pKa = 8.67TDD260 pKa = 3.19YY261 pKa = 10.73SYY263 pKa = 11.55RR264 pKa = 11.84RR265 pKa = 11.84LILPSFVAAALRR277 pKa = 11.84RR278 pKa = 11.84QLARR282 pKa = 11.84NLPTDD287 pKa = 4.05DD288 pKa = 3.8LHH290 pKa = 9.05LVFPSRR296 pKa = 11.84TGGPRR301 pKa = 11.84MGNNVRR307 pKa = 11.84RR308 pKa = 11.84QLRR311 pKa = 11.84EE312 pKa = 3.62ARR314 pKa = 11.84GDD316 pKa = 3.57DD317 pKa = 4.09FDD319 pKa = 3.91WVTPKK324 pKa = 10.51VYY326 pKa = 10.5RR327 pKa = 11.84KK328 pKa = 7.56TVATAIDD335 pKa = 3.53RR336 pKa = 11.84AADD339 pKa = 3.11IEE341 pKa = 4.41TAARR345 pKa = 11.84QLGHH349 pKa = 6.24SRR351 pKa = 11.84STTTQAHH358 pKa = 4.56YY359 pKa = 10.73VEE361 pKa = 4.99RR362 pKa = 11.84LLVAPDD368 pKa = 3.29VRR370 pKa = 11.84DD371 pKa = 3.52VLDD374 pKa = 3.44EE375 pKa = 4.46FGPVSRR381 pKa = 11.84GFSVGDD387 pKa = 3.33VSS389 pKa = 4.72

Molecular weight: 42.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

74

0

74

14950

38

2137

202.0

21.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.575 ± 0.548

0.696 ± 0.124

6.749 ± 0.407

5.579 ± 0.252

2.408 ± 0.162

8.415 ± 0.46

1.96 ± 0.2

4.589 ± 0.204

3.157 ± 0.255

7.819 ± 0.227

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.047 ± 0.124

3.043 ± 0.24

5.679 ± 0.284

3.726 ± 0.328

7.505 ± 0.467

5.344 ± 0.229

7.344 ± 0.27

7.324 ± 0.293

1.853 ± 0.144

2.187 ± 0.135
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski