Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Peptococcaceae; Desulfitobacterium; Desulfitobacterium dichloroeliminans

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3294 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|L0F8G0|L0F8G0_DESDL ABC-type multidrug transport system ATPase component OS=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) OX=871963 GN=Desdi_1443 PE=4 SV=1
MM1 pKa = 7.68SDD3 pKa = 3.6VIGIPNPPPGTCLPWEE19 pKa = 5.35KK20 pKa = 9.39ITEE23 pKa = 4.48DD24 pKa = 3.51YY25 pKa = 10.63GPPVGDD31 pKa = 3.37EE32 pKa = 4.45ALLKK36 pKa = 9.86GQWEE40 pKa = 4.25EE41 pKa = 4.08LDD43 pKa = 3.53ALAYY47 pKa = 10.47LYY49 pKa = 10.29LWWWVQRR56 pKa = 3.88

Molecular weight: 6.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|L0F2N9|L0F2N9_DESDL Uncharacterized protein OS=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) OX=871963 GN=Desdi_0561 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.49RR3 pKa = 11.84TWQPKK8 pKa = 7.14NRR10 pKa = 11.84RR11 pKa = 11.84HH12 pKa = 4.85QRR14 pKa = 11.84VHH16 pKa = 6.14GFLSRR21 pKa = 11.84MSSSTGRR28 pKa = 11.84NVLKK32 pKa = 10.5RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.19GRR39 pKa = 11.84KK40 pKa = 8.79KK41 pKa = 10.63LSAA44 pKa = 3.95

Molecular weight: 5.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3294

0

3294

1018540

29

2872

309.2

34.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.745 ± 0.043

1.079 ± 0.019

4.971 ± 0.028

7.234 ± 0.045

4.025 ± 0.031

7.469 ± 0.041

1.893 ± 0.021

7.296 ± 0.047

6.031 ± 0.034

10.35 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.714 ± 0.021

3.944 ± 0.029

4.013 ± 0.028

3.915 ± 0.033

4.69 ± 0.033

5.896 ± 0.036

5.253 ± 0.037

7.069 ± 0.032

1.079 ± 0.017

3.336 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski