Martelella sp. BGMRC2036

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Aurantimonadaceae; Martelella

Average proteome isoelectric point is 6.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4394 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A506U505|A0A506U505_9RHIZ Cytochrome bo(3) ubiquinol oxidase subunit 4 OS=Martelella sp. BGMRC2036 OX=2590451 GN=cyoD PE=3 SV=1
MM1 pKa = 7.11LQRR4 pKa = 11.84RR5 pKa = 11.84EE6 pKa = 4.11LRR8 pKa = 11.84LLPPSLSISKK18 pKa = 10.72SMTGPHH24 pKa = 6.62LNLEE28 pKa = 4.25YY29 pKa = 10.35RR30 pKa = 11.84RR31 pKa = 11.84SYY33 pKa = 11.01DD34 pKa = 4.17YY35 pKa = 11.33EE36 pKa = 4.24DD37 pKa = 3.6QPEE40 pKa = 4.43DD41 pKa = 3.72KK42 pKa = 10.98SIDD45 pKa = 3.17RR46 pKa = 11.84GTRR49 pKa = 11.84DD50 pKa = 3.2WIAAEE55 pKa = 4.01QPKK58 pKa = 10.11VYY60 pKa = 10.53HH61 pKa = 6.84FIFTVGDD68 pKa = 3.54DD69 pKa = 3.59RR70 pKa = 11.84LKK72 pKa = 10.34VTGTDD77 pKa = 3.45FDD79 pKa = 4.15TGFLADD85 pKa = 4.02MRR87 pKa = 11.84SGNDD91 pKa = 4.97FVTTWDD97 pKa = 3.72NPYY100 pKa = 10.8LPASTFWMGSGNDD113 pKa = 3.49VANVCGSSPTSDD125 pKa = 3.2EE126 pKa = 5.2DD127 pKa = 3.45EE128 pKa = 5.1DD129 pKa = 4.62EE130 pKa = 4.17EE131 pKa = 4.58VTRR134 pKa = 11.84VLCDD138 pKa = 4.51DD139 pKa = 4.95GDD141 pKa = 5.0DD142 pKa = 4.88GDD144 pKa = 5.75DD145 pKa = 4.37GDD147 pKa = 5.94DD148 pKa = 3.4IVNITGGGYY157 pKa = 11.0ANVFGDD163 pKa = 4.57DD164 pKa = 4.56GNDD167 pKa = 3.7TLCVQQNGAFKK178 pKa = 10.78SGVISLTGGAGYY190 pKa = 8.14DD191 pKa = 3.5TFLVTQHH198 pKa = 6.84PSSSYY203 pKa = 11.07NLPTSTGPASIGIFVTDD220 pKa = 3.12VLQDD224 pKa = 3.47VLGWVPGVGLATHH237 pKa = 7.18AAAALISTTTMAARR251 pKa = 11.84QSTRR255 pKa = 11.84FLNEE259 pKa = 3.15FSGAMDD265 pKa = 4.03GQDD268 pKa = 2.83GSVNIPQGGDD278 pKa = 3.17TYY280 pKa = 11.78VSIEE284 pKa = 4.47DD285 pKa = 3.92FDD287 pKa = 4.39PLEE290 pKa = 4.52DD291 pKa = 4.25QLVQTYY297 pKa = 8.29LHH299 pKa = 6.08NTNGMEE305 pKa = 4.06QYY307 pKa = 10.14SWQSQDD313 pKa = 3.17VASDD317 pKa = 3.38NFSIAFKK324 pKa = 10.98SDD326 pKa = 3.01GTNVSSVIHH335 pKa = 6.12VDD337 pKa = 3.28PAIVEE342 pKa = 4.25TLRR345 pKa = 11.84GIEE348 pKa = 4.14DD349 pKa = 3.19AHH351 pKa = 6.96GEE353 pKa = 4.18RR354 pKa = 11.84GSLPASDD361 pKa = 5.79AEE363 pKa = 4.35MKK365 pKa = 10.9NKK367 pKa = 9.93ILTSMVDD374 pKa = 3.37SIVNIKK380 pKa = 10.62KK381 pKa = 10.51EE382 pKa = 3.99GDD384 pKa = 3.48DD385 pKa = 4.65LYY387 pKa = 11.17IMLQGNGGYY396 pKa = 10.31DD397 pKa = 3.72KK398 pKa = 11.33QPVDD402 pKa = 3.49TDD404 pKa = 3.67QVEE407 pKa = 4.54SALSAMQSSSSDD419 pKa = 3.46LSSLIANMHH428 pKa = 6.46NGDD431 pKa = 3.46QYY433 pKa = 11.91YY434 pKa = 11.1LLGNTPVKK442 pKa = 10.64LGGPSTDD449 pKa = 2.94GATNITLGDD458 pKa = 3.49NDD460 pKa = 4.93SNVMFAGTTQDD471 pKa = 2.58WVTDD475 pKa = 4.22KK476 pKa = 11.35NGHH479 pKa = 5.0TSALEE484 pKa = 3.88DD485 pKa = 3.66HH486 pKa = 7.52DD487 pKa = 4.02GTFYY491 pKa = 10.7PSQHH495 pKa = 5.43MTSTMFGMGGDD506 pKa = 4.05DD507 pKa = 3.79IIYY510 pKa = 10.33GSFGEE515 pKa = 4.31DD516 pKa = 2.51CVYY519 pKa = 11.1AGDD522 pKa = 4.24GNDD525 pKa = 4.16MISTGAGNDD534 pKa = 3.98YY535 pKa = 10.98VWGDD539 pKa = 3.25AGDD542 pKa = 4.91DD543 pKa = 4.14YY544 pKa = 11.6ICGGRR549 pKa = 11.84GDD551 pKa = 3.94DD552 pKa = 3.93TLFGGDD558 pKa = 3.7GKK560 pKa = 10.75DD561 pKa = 2.8IFSFDD566 pKa = 3.83AEE568 pKa = 4.43SGHH571 pKa = 7.46DD572 pKa = 3.86IIRR575 pKa = 11.84DD576 pKa = 3.81FTPGEE581 pKa = 3.99DD582 pKa = 4.03KK583 pKa = 10.79IALVADD589 pKa = 3.32NWDD592 pKa = 3.79ALQSQIDD599 pKa = 3.79TSNANVPVITLNDD612 pKa = 3.65GSTVAVTLSNGQGLSEE628 pKa = 4.06NDD630 pKa = 3.86FYY632 pKa = 12.11YY633 pKa = 10.29MGANTALVFGHH644 pKa = 6.96TGTEE648 pKa = 4.38GNDD651 pKa = 3.58TIYY654 pKa = 11.28DD655 pKa = 3.71DD656 pKa = 3.92TSIVALRR663 pKa = 11.84GLSGDD668 pKa = 3.75DD669 pKa = 3.95TIHH672 pKa = 7.53CEE674 pKa = 3.51EE675 pKa = 5.49GYY677 pKa = 10.85NSGVFGDD684 pKa = 4.98DD685 pKa = 3.84GNDD688 pKa = 3.2TIYY691 pKa = 11.22ASNCSSGGFSGGAGDD706 pKa = 4.82DD707 pKa = 3.85RR708 pKa = 11.84IFAGSAGGVFFGDD721 pKa = 3.75AGDD724 pKa = 4.15DD725 pKa = 3.65SLYY728 pKa = 11.06GGSGEE733 pKa = 4.92DD734 pKa = 4.18DD735 pKa = 5.18FYY737 pKa = 11.5FQDD740 pKa = 3.95GFGHH744 pKa = 5.5DD745 pKa = 3.93TIYY748 pKa = 11.16GFAASTSMVANVYY761 pKa = 9.3EE762 pKa = 4.62PKK764 pKa = 10.75DD765 pKa = 3.67KK766 pKa = 10.71IALQGVSGLSDD777 pKa = 3.41WEE779 pKa = 4.15AVSNQITYY787 pKa = 10.18TDD789 pKa = 4.58LPDD792 pKa = 3.78SGYY795 pKa = 10.88CAIINDD801 pKa = 3.75GHH803 pKa = 7.17GNEE806 pKa = 4.32IDD808 pKa = 3.36IMLATGTQLVEE819 pKa = 3.93SDD821 pKa = 4.72FIFAA825 pKa = 5.1

Molecular weight: 87.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A506U755|A0A506U755_9RHIZ Dephospho-CoA kinase OS=Martelella sp. BGMRC2036 OX=2590451 GN=coaE PE=3 SV=1
MM1 pKa = 6.51STKK4 pKa = 9.4RR5 pKa = 11.84TYY7 pKa = 10.43QPSKK11 pKa = 9.73LVRR14 pKa = 11.84KK15 pKa = 9.15RR16 pKa = 11.84RR17 pKa = 11.84HH18 pKa = 4.42GFRR21 pKa = 11.84ARR23 pKa = 11.84MATKK27 pKa = 10.27GGRR30 pKa = 11.84AVLAARR36 pKa = 11.84RR37 pKa = 11.84TRR39 pKa = 11.84GRR41 pKa = 11.84KK42 pKa = 9.13RR43 pKa = 11.84LSAA46 pKa = 4.03

Molecular weight: 5.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4394

0

4394

1450704

24

4640

330.2

35.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.964 ± 0.045

0.825 ± 0.011

5.942 ± 0.035

5.609 ± 0.034

4.064 ± 0.025

8.496 ± 0.068

1.974 ± 0.019

5.832 ± 0.025

3.549 ± 0.027

9.997 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.739 ± 0.019

2.906 ± 0.022

4.822 ± 0.031

3.01 ± 0.021

6.304 ± 0.043

5.842 ± 0.041

5.449 ± 0.034

7.058 ± 0.034

1.222 ± 0.017

2.397 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski