Flavobacterium succinicans

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

Average proteome isoelectric point is 6.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2812 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A199XUI8|A0A199XUI8_9FLAO 1 4-dihydroxy-2-naphthoate octaprenyltransferase OS=Flavobacterium succinicans OX=29536 GN=menA PE=3 SV=1
MM1 pKa = 7.39LAIIIPYY8 pKa = 9.47YY9 pKa = 10.75KK10 pKa = 9.94LTFFEE15 pKa = 4.71ATLQSLAAQTCQDD28 pKa = 3.46FKK30 pKa = 11.83VYY32 pKa = 10.29IGDD35 pKa = 3.86DD36 pKa = 3.56ASPEE40 pKa = 4.12KK41 pKa = 9.65PTEE44 pKa = 3.97LLEE47 pKa = 4.44HH48 pKa = 6.28FQGQFDD54 pKa = 4.0FVYY57 pKa = 10.61HH58 pKa = 6.43RR59 pKa = 11.84FEE61 pKa = 4.5FNLGGVSLTQQWEE74 pKa = 4.01RR75 pKa = 11.84CIALSDD81 pKa = 3.77NEE83 pKa = 4.33PWLMILGDD91 pKa = 4.37DD92 pKa = 4.59DD93 pKa = 4.63VLGEE97 pKa = 4.19NVVEE101 pKa = 4.26AFYY104 pKa = 11.66NNN106 pKa = 3.21

Molecular weight: 12.23 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A199XU36|A0A199XU36_9FLAO IMPACT family member YigZ OS=Flavobacterium succinicans OX=29536 GN=yigZ PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSKK10 pKa = 9.13RR11 pKa = 11.84KK12 pKa = 9.48RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 9.91HH17 pKa = 4.39GFMDD21 pKa = 4.5RR22 pKa = 11.84MASANGRR29 pKa = 11.84KK30 pKa = 9.04VLARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.19GRR40 pKa = 11.84HH41 pKa = 5.41KK42 pKa = 10.14LTVSSEE48 pKa = 3.92PRR50 pKa = 11.84HH51 pKa = 5.77KK52 pKa = 10.61KK53 pKa = 9.84

Molecular weight: 6.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2812

0

2812

957848

29

3329

340.6

38.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.835 ± 0.045

0.758 ± 0.015

5.082 ± 0.035

6.225 ± 0.049

5.436 ± 0.041

6.335 ± 0.047

1.699 ± 0.021

7.844 ± 0.045

7.979 ± 0.057

9.306 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.172 ± 0.022

6.196 ± 0.048

3.469 ± 0.023

3.657 ± 0.026

3.135 ± 0.029

6.398 ± 0.034

6.109 ± 0.057

6.333 ± 0.038

1.046 ± 0.018

3.986 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski