Tritrichomonas foetus

Taxonomy: cellular organisms; Eukaryota; Metamonada; Parabasalia; Tritrichomonadida; Tritrichomonadidae; Tritrichomonas

Average proteome isoelectric point is 6.35

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 24634 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1J4KJT4|A0A1J4KJT4_9EUKA Uncharacterized protein OS=Tritrichomonas foetus OX=1144522 GN=TRFO_21408 PE=4 SV=1
MM1 pKa = 7.36NNDD4 pKa = 5.28LINDD8 pKa = 4.36RR9 pKa = 11.84ANKK12 pKa = 9.81LLPNNIGPHH21 pKa = 6.36NINDD25 pKa = 4.75LDD27 pKa = 4.01LQQIKK32 pKa = 10.29PPDD35 pKa = 3.73DD36 pKa = 4.83NYY38 pKa = 11.66DD39 pKa = 3.23NDD41 pKa = 4.06YY42 pKa = 11.2QADD45 pKa = 4.04TQNPSTVDD53 pKa = 3.41PTHH56 pKa = 6.76EE57 pKa = 4.12SAANIPTNEE66 pKa = 4.06INDD69 pKa = 3.77DD70 pKa = 3.63SSIYY74 pKa = 10.42DD75 pKa = 3.32SNYY78 pKa = 9.71DD79 pKa = 3.34SNYY82 pKa = 9.46YY83 pKa = 7.71STNYY87 pKa = 9.62EE88 pKa = 3.69STYY91 pKa = 11.19ASTAATTANSILVNGKK107 pKa = 8.8SGRR110 pKa = 11.84RR111 pKa = 11.84YY112 pKa = 10.53DD113 pKa = 3.64SAGTDD118 pKa = 3.38VPINNDD124 pKa = 3.19PSDD127 pKa = 3.26

Molecular weight: 13.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1J4JFQ1|A0A1J4JFQ1_9EUKA Uncharacterized protein OS=Tritrichomonas foetus OX=1144522 GN=TRFO_37357 PE=4 SV=1
MM1 pKa = 7.84RR2 pKa = 11.84IIRR5 pKa = 11.84MKK7 pKa = 9.82IIRR10 pKa = 11.84MRR12 pKa = 11.84IIRR15 pKa = 11.84MRR17 pKa = 11.84IIRR20 pKa = 11.84MKK22 pKa = 9.71IIRR25 pKa = 11.84MRR27 pKa = 11.84IIRR30 pKa = 11.84MRR32 pKa = 11.84IIRR35 pKa = 11.84MKK37 pKa = 10.17IIIMKK42 pKa = 9.35IIIMRR47 pKa = 11.84IIGIIIIRR55 pKa = 11.84MRR57 pKa = 11.84IGLIQHH63 pKa = 6.1NVV65 pKa = 2.78

Molecular weight: 8.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

24634

0

24634

13073236

29

7078

530.7

60.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.793 ± 0.012

1.567 ± 0.008

5.518 ± 0.009

6.865 ± 0.02

5.722 ± 0.029

3.654 ± 0.014

2.154 ± 0.006

8.356 ± 0.016

7.463 ± 0.019

9.158 ± 0.017

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.243 ± 0.006

7.137 ± 0.018

4.194 ± 0.013

4.444 ± 0.016

3.809 ± 0.011

8.505 ± 0.019

5.157 ± 0.01

4.896 ± 0.011

0.743 ± 0.004

3.448 ± 0.01
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski