Apis mellifera associated microvirus 40

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 7.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3S8UU45|A0A3S8UU45_9VIRU Uncharacterized protein OS=Apis mellifera associated microvirus 40 OX=2494770 PE=4 SV=1
MM1 pKa = 7.7RR2 pKa = 11.84FDD4 pKa = 3.17EE5 pKa = 5.12HH6 pKa = 8.13GRR8 pKa = 11.84EE9 pKa = 4.34LPDD12 pKa = 3.68DD13 pKa = 3.89TPIAKK18 pKa = 9.32PVRR21 pKa = 11.84FNRR24 pKa = 11.84PGSTLDD30 pKa = 3.51EE31 pKa = 4.08IRR33 pKa = 11.84RR34 pKa = 11.84NLDD37 pKa = 2.84MANRR41 pKa = 11.84LAQEE45 pKa = 4.04QGLEE49 pKa = 4.27TFDD52 pKa = 4.26EE53 pKa = 4.92ADD55 pKa = 4.05DD56 pKa = 3.97FQIGDD61 pKa = 4.18DD62 pKa = 4.14FEE64 pKa = 6.16EE65 pKa = 3.93NHH67 pKa = 6.36PWAEE71 pKa = 4.41QIDD74 pKa = 3.9NMNRR78 pKa = 11.84EE79 pKa = 4.15FEE81 pKa = 4.35EE82 pKa = 3.52IRR84 pKa = 11.84NKK86 pKa = 9.78VRR88 pKa = 11.84EE89 pKa = 3.86ARR91 pKa = 11.84LRR93 pKa = 11.84GEE95 pKa = 4.07IEE97 pKa = 3.93VTEE100 pKa = 4.43DD101 pKa = 3.12GRR103 pKa = 11.84WYY105 pKa = 10.51SKK107 pKa = 10.66PKK109 pKa = 9.91AAEE112 pKa = 3.81PSRR115 pKa = 11.84GVPEE119 pKa = 4.47APQPSVSNAQLSQPANGAPPNQPSPSAPNNPNKK152 pKa = 10.23PP153 pKa = 3.47

Molecular weight: 17.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3S8UU45|A0A3S8UU45_9VIRU Uncharacterized protein OS=Apis mellifera associated microvirus 40 OX=2494770 PE=4 SV=1
MM1 pKa = 7.72RR2 pKa = 11.84FSGLPARR9 pKa = 11.84VVAAPLKK16 pKa = 9.19KK17 pKa = 8.89TATARR22 pKa = 11.84SKK24 pKa = 10.76GLRR27 pKa = 11.84RR28 pKa = 11.84TSMGALLFSAPSRR41 pKa = 11.84VAVCVQRR48 pKa = 11.84GVRR51 pKa = 11.84KK52 pKa = 9.14EE53 pKa = 3.89VLHH56 pKa = 5.58ATGNVGRR63 pKa = 11.84NRR65 pKa = 11.84PGRR68 pKa = 11.84PGPFSKK74 pKa = 10.54VRR76 pKa = 11.84CKK78 pKa = 10.77

Molecular weight: 8.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1351

78

493

270.2

29.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.215 ± 0.878

0.814 ± 0.455

4.589 ± 0.769

6.144 ± 0.994

3.183 ± 0.673

8.956 ± 0.588

2.369 ± 0.357

3.701 ± 0.513

3.553 ± 0.527

8.364 ± 0.918

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.147 ± 0.256

3.331 ± 0.878

6.662 ± 1.134

4.663 ± 0.307

8.808 ± 0.877

6.736 ± 1.157

5.477 ± 0.642

5.699 ± 0.618

1.628 ± 0.285

2.961 ± 0.604
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski