Leucobacter chromiiresistens

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Leucobacter

Average proteome isoelectric point is 6.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2423 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A147ERP8|A0A147ERP8_9MICO Inner-membrane translocator OS=Leucobacter chromiiresistens OX=1079994 GN=NS354_01550 PE=4 SV=1
AA1 pKa = 7.62AAQAVFDD8 pKa = 4.62RR9 pKa = 11.84VNADD13 pKa = 2.98GGIDD17 pKa = 3.6GRR19 pKa = 11.84QIEE22 pKa = 4.89YY23 pKa = 8.1TTVDD27 pKa = 3.93DD28 pKa = 5.25KK29 pKa = 11.91GDD31 pKa = 3.93PASATAAARR40 pKa = 11.84QLVGSDD46 pKa = 3.24EE47 pKa = 4.38VVALVGGASLIEE59 pKa = 4.09CEE61 pKa = 4.66INQEE65 pKa = 4.1YY66 pKa = 9.34YY67 pKa = 10.44AQEE70 pKa = 4.26NVLSMPGIGVDD81 pKa = 3.66TGCFDD86 pKa = 4.21SPNIAPANLGPFNDD100 pKa = 3.7MTLTLLNGSEE110 pKa = 4.17NLGLDD115 pKa = 4.57DD116 pKa = 4.09ICVLLEE122 pKa = 3.83IAGSTKK128 pKa = 9.4PAYY131 pKa = 10.17LAGVEE136 pKa = 4.09KK137 pKa = 8.66WTEE140 pKa = 3.72ITGEE144 pKa = 4.12EE145 pKa = 4.41PLLVDD150 pKa = 5.28DD151 pKa = 4.65SLPYY155 pKa = 10.49GGSDD159 pKa = 3.23YY160 pKa = 11.14TPYY163 pKa = 10.17IVKK166 pKa = 10.28AKK168 pKa = 10.48NAGCSAIAVNGIEE181 pKa = 4.51PDD183 pKa = 3.82AIGQVKK189 pKa = 9.47AAQAQGWDD197 pKa = 3.32DD198 pKa = 3.54VTFLFLTSVYY208 pKa = 10.7SEE210 pKa = 4.39NFASALDD217 pKa = 3.5WTGAGVHH224 pKa = 5.68VPAEE228 pKa = 4.43FYY230 pKa = 10.62PFTEE234 pKa = 4.6DD235 pKa = 4.48NEE237 pKa = 4.43INADD241 pKa = 3.28WKK243 pKa = 11.41SLMEE247 pKa = 4.66EE248 pKa = 3.68NDD250 pKa = 3.1IALTSFSQGGYY261 pKa = 9.66LAATHH266 pKa = 5.91LVEE269 pKa = 4.56VLSGMEE275 pKa = 3.95GEE277 pKa = 4.29ITRR280 pKa = 11.84EE281 pKa = 3.87TVAEE285 pKa = 4.34ALHH288 pKa = 6.71GMDD291 pKa = 5.32PIEE294 pKa = 4.72NPMVAAPYY302 pKa = 10.56QFDD305 pKa = 3.22QVAAQEE311 pKa = 4.19YY312 pKa = 8.57TPGGWPVVLEE322 pKa = 4.21SGTRR326 pKa = 11.84AWKK329 pKa = 10.33QSADD333 pKa = 3.24DD334 pKa = 3.78WLIPSSS340 pKa = 3.62

Molecular weight: 36.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A147ERN6|A0A147ERN6_9MICO Nitrilase OS=Leucobacter chromiiresistens OX=1079994 GN=NS354_00710 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 9.5VHH17 pKa = 5.46GFRR20 pKa = 11.84ARR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AIVAARR35 pKa = 11.84RR36 pKa = 11.84GKK38 pKa = 10.45GRR40 pKa = 11.84SKK42 pKa = 10.13LTAA45 pKa = 4.04

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2423

0

2423

786420

27

3966

324.6

34.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.173 ± 0.078

0.51 ± 0.01

5.908 ± 0.04

6.206 ± 0.051

3.203 ± 0.036

9.155 ± 0.046

1.989 ± 0.025

4.613 ± 0.039

1.75 ± 0.034

10.023 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.778 ± 0.022

1.876 ± 0.028

5.29 ± 0.035

2.903 ± 0.024

7.549 ± 0.056

5.63 ± 0.037

5.574 ± 0.043

8.626 ± 0.04

1.343 ± 0.019

1.903 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski