Caulobacter phage Lullwater

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Lullwatervirus; Caulobacter virus Lullwater

Average proteome isoelectric point is 6.66

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 52 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A291LB23|A0A291LB23_9CAUD DNA helicase OS=Caulobacter phage Lullwater OX=2024607 GN=Lull_017 PE=4 SV=1
MM1 pKa = 7.68LGPSVYY7 pKa = 10.55LPVGVQLLKK16 pKa = 10.93DD17 pKa = 3.02IGLNVDD23 pKa = 3.6PPKK26 pKa = 11.12GRR28 pKa = 11.84DD29 pKa = 3.04PWDD32 pKa = 3.96YY33 pKa = 10.07ICEE36 pKa = 4.32DD37 pKa = 3.66EE38 pKa = 5.58SVTFTDD44 pKa = 3.25QTDD47 pKa = 3.53RR48 pKa = 11.84DD49 pKa = 3.61ILEE52 pKa = 3.89AHH54 pKa = 7.14GIVVDD59 pKa = 4.24CTPVDD64 pKa = 3.08AFMNRR69 pKa = 11.84GYY71 pKa = 11.33GFLLTEE77 pKa = 4.4EE78 pKa = 4.63DD79 pKa = 3.51

Molecular weight: 8.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A291LC12|A0A291LC12_9CAUD Uncharacterized protein OS=Caulobacter phage Lullwater OX=2024607 GN=Lull_012 PE=4 SV=1
MM1 pKa = 8.21DD2 pKa = 5.71DD3 pKa = 3.68FASFGIGLVAVVFAAVLVWRR23 pKa = 11.84EE24 pKa = 3.55RR25 pKa = 11.84QAYY28 pKa = 7.1MWRR31 pKa = 11.84QRR33 pKa = 11.84QIAKK37 pKa = 10.49GKK39 pKa = 9.37DD40 pKa = 3.16LRR42 pKa = 11.84PP43 pKa = 3.54

Molecular weight: 5.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

52

0

52

13664

40

1317

262.8

29.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.992 ± 0.532

0.746 ± 0.128

6.279 ± 0.186

5.782 ± 0.335

3.476 ± 0.172

7.362 ± 0.294

1.778 ± 0.17

4.537 ± 0.191

5.657 ± 0.269

8.277 ± 0.277

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.605 ± 0.208

4.215 ± 0.189

3.967 ± 0.221

4.311 ± 0.306

5.708 ± 0.292

6.038 ± 0.257

6.316 ± 0.436

6.828 ± 0.321

1.566 ± 0.164

3.557 ± 0.216
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski