Lapidilactobacillus dextrinicus DSM 20335

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lapidilactobacillus; Lapidilactobacillus dextrinicus

Average proteome isoelectric point is 6.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1691 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R2BKH3|A0A0R2BKH3_9LACO Response regulator OS=Lapidilactobacillus dextrinicus DSM 20335 OX=1423738 GN=FC84_GL000952 PE=4 SV=1
MM1 pKa = 7.08ATAKK5 pKa = 9.85IVYY8 pKa = 10.55ASMTGNNEE16 pKa = 3.64EE17 pKa = 4.03IAQIMEE23 pKa = 4.13EE24 pKa = 4.01QFEE27 pKa = 4.35NLGVEE32 pKa = 4.09VDD34 pKa = 3.61TTEE37 pKa = 4.93ASQADD42 pKa = 3.52ASDD45 pKa = 4.22FEE47 pKa = 5.36DD48 pKa = 3.9VDD50 pKa = 3.54ICVVATYY57 pKa = 10.46TDD59 pKa = 4.07GEE61 pKa = 4.56GEE63 pKa = 4.44IPDD66 pKa = 4.11EE67 pKa = 4.46AQDD70 pKa = 5.03FYY72 pKa = 11.92DD73 pKa = 5.29DD74 pKa = 4.31LQEE77 pKa = 4.11EE78 pKa = 4.71DD79 pKa = 4.17LTGKK83 pKa = 10.2IYY85 pKa = 8.06GTCGSGDD92 pKa = 3.65RR93 pKa = 11.84FYY95 pKa = 11.71GDD97 pKa = 3.93HH98 pKa = 6.82FCATVDD104 pKa = 4.6DD105 pKa = 4.71FDD107 pKa = 3.9HH108 pKa = 6.88TFAQTGATKK117 pKa = 10.32GAEE120 pKa = 4.12SVKK123 pKa = 10.12IDD125 pKa = 3.96LAAEE129 pKa = 4.25AEE131 pKa = 4.55DD132 pKa = 4.84IEE134 pKa = 4.88NLDD137 pKa = 3.71TFVKK141 pKa = 10.48EE142 pKa = 4.19LVAKK146 pKa = 10.75ANANGG151 pKa = 3.38

Molecular weight: 16.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R2BUP7|A0A0R2BUP7_9LACO Transcriptional regulator OS=Lapidilactobacillus dextrinicus DSM 20335 OX=1423738 GN=FC84_GL000698 PE=4 SV=1
MM1 pKa = 7.39IAFFGFWGGVARR13 pKa = 11.84LYY15 pKa = 8.79GTHH18 pKa = 7.33LLASPWNTLTINLLGAFLLPMWTGFLGPRR47 pKa = 11.84LAKK50 pKa = 9.81NRR52 pKa = 11.84HH53 pKa = 4.42WLVLGVGTGFFGAFTTFSSFCLDD76 pKa = 3.63FVKK79 pKa = 10.89LIIANQLTSALAYY92 pKa = 10.4LGISIIGGVLVAWLGVTVAQRR113 pKa = 11.84LTMKK117 pKa = 10.35EE118 pKa = 3.65MRR120 pKa = 11.84FF121 pKa = 3.55

Molecular weight: 13.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1691

0

1691

520490

50

1447

307.8

34.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.255 ± 0.069

0.451 ± 0.014

5.778 ± 0.053

5.565 ± 0.064

4.203 ± 0.048

6.423 ± 0.049

2.15 ± 0.026

7.254 ± 0.054

6.0 ± 0.052

10.142 ± 0.072

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.509 ± 0.028

4.791 ± 0.045

3.658 ± 0.03

5.36 ± 0.063

3.995 ± 0.042

5.653 ± 0.07

6.366 ± 0.047

6.932 ± 0.048

0.995 ± 0.023

3.52 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski