Gordonia iterans

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Gordoniaceae; Gordonia

Average proteome isoelectric point is 6.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3450 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S0KG08|A0A2S0KG08_9ACTN Shikimate kinase OS=Gordonia iterans OX=1004901 GN=aroK PE=3 SV=1
MM1 pKa = 7.64SRR3 pKa = 11.84FLQFYY8 pKa = 10.09FSLNDD13 pKa = 3.47SGSVAEE19 pKa = 4.21QQMTEE24 pKa = 3.8AVRR27 pKa = 11.84LVLSADD33 pKa = 3.75PDD35 pKa = 4.28DD36 pKa = 5.72DD37 pKa = 3.93PVEE40 pKa = 4.51AGGPVDD46 pKa = 3.43EE47 pKa = 5.15ARR49 pKa = 11.84VEE51 pKa = 4.39EE52 pKa = 4.48IMSVAHH58 pKa = 6.68SAAQDD63 pKa = 3.46GHH65 pKa = 6.61PLPLEE70 pKa = 4.1EE71 pKa = 5.16RR72 pKa = 11.84SDD74 pKa = 3.76VSVDD78 pKa = 3.72LGPGATVSAFSDD90 pKa = 3.84SLPPEE95 pKa = 4.69CPQCHH100 pKa = 6.08EE101 pKa = 5.17LLSDD105 pKa = 4.01WDD107 pKa = 3.85PQEE110 pKa = 3.66WWDD113 pKa = 4.49GGDD116 pKa = 3.85EE117 pKa = 4.48PEE119 pKa = 4.6EE120 pKa = 4.03QCPSCGFTALVGDD133 pKa = 4.45WLIQSTPYY141 pKa = 11.11ARR143 pKa = 11.84TEE145 pKa = 4.09CGLVLVDD152 pKa = 3.65WPSLEE157 pKa = 4.16EE158 pKa = 4.19YY159 pKa = 10.9GPEE162 pKa = 3.85LHH164 pKa = 7.39DD165 pKa = 4.83ALLSTVGSRR174 pKa = 11.84PRR176 pKa = 11.84YY177 pKa = 9.11VSGHH181 pKa = 4.1VV182 pKa = 3.02

Molecular weight: 19.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S0KKF0|A0A2S0KKF0_9ACTN Amidohydro-rel domain-containing protein OS=Gordonia iterans OX=1004901 GN=C6V83_08905 PE=4 SV=1
MM1 pKa = 7.32PRR3 pKa = 11.84KK4 pKa = 9.11PRR6 pKa = 11.84TVRR9 pKa = 11.84SPSPVRR15 pKa = 11.84RR16 pKa = 11.84ARR18 pKa = 11.84RR19 pKa = 11.84FRR21 pKa = 11.84RR22 pKa = 11.84PRR24 pKa = 11.84TRR26 pKa = 11.84RR27 pKa = 11.84RR28 pKa = 11.84PPPSKK33 pKa = 10.29RR34 pKa = 11.84PLRR37 pKa = 11.84RR38 pKa = 11.84PPRR41 pKa = 11.84GVRR44 pKa = 11.84RR45 pKa = 11.84RR46 pKa = 11.84TRR48 pKa = 11.84RR49 pKa = 11.84RR50 pKa = 11.84LRR52 pKa = 11.84PARR55 pKa = 11.84RR56 pKa = 11.84RR57 pKa = 11.84PTGCSRR63 pKa = 11.84APSS66 pKa = 3.42

Molecular weight: 8.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3450

0

3450

1168669

28

10134

338.7

36.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.323 ± 0.055

0.725 ± 0.014

6.553 ± 0.033

5.547 ± 0.032

2.937 ± 0.022

9.136 ± 0.038

2.015 ± 0.02

4.104 ± 0.03

2.139 ± 0.033

9.842 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.898 ± 0.018

1.97 ± 0.023

5.818 ± 0.029

2.755 ± 0.022

7.506 ± 0.046

5.36 ± 0.027

5.96 ± 0.03

8.945 ± 0.049

1.416 ± 0.019

2.052 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski