Trichinella pseudospiralis (Parasitic roundworm)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Enoplea; Dorylaimia; Trichinellida; Trichinellidae; Trichinella

Average proteome isoelectric point is 6.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 14914 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0V0W537|A0A0V0W537_TRIPS Uncharacterized protein OS=Trichinella pseudospiralis OX=6337 GN=T4E_10601 PE=4 SV=1
MM1 pKa = 7.5AGVPPFDD8 pKa = 3.28VPSFNFYY15 pKa = 10.84VEE17 pKa = 4.45SIKK20 pKa = 10.4ILPKK24 pKa = 10.34NFVHH28 pKa = 6.13RR29 pKa = 11.84TYY31 pKa = 10.93NIQTEE36 pKa = 4.52AEE38 pKa = 4.01EE39 pKa = 4.52STRR42 pKa = 11.84SSQLYY47 pKa = 7.92EE48 pKa = 3.96AEE50 pKa = 4.46YY51 pKa = 10.2PMGMYY56 pKa = 10.07NPKK59 pKa = 10.1QPFEE63 pKa = 4.11VEE65 pKa = 3.57RR66 pKa = 11.84FEE68 pKa = 4.44IRR70 pKa = 11.84DD71 pKa = 3.5GAGEE75 pKa = 4.05DD76 pKa = 3.88VEE78 pKa = 4.97EE79 pKa = 4.21LAAVQQHH86 pKa = 5.86EE87 pKa = 4.63EE88 pKa = 4.3DD89 pKa = 3.76FGDD92 pKa = 3.7RR93 pKa = 11.84SPAEE97 pKa = 4.38EE98 pKa = 4.26YY99 pKa = 9.47TSSVASYY106 pKa = 11.47SNASFNDD113 pKa = 3.6DD114 pKa = 4.12DD115 pKa = 6.94DD116 pKa = 5.31EE117 pKa = 7.19DD118 pKa = 4.8EE119 pKa = 5.63DD120 pKa = 4.3DD121 pKa = 4.48ASSIEE126 pKa = 3.6ADD128 pKa = 3.85YY129 pKa = 11.41YY130 pKa = 11.39FEE132 pKa = 4.31

Molecular weight: 15.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0V0WJS3|A0A0V0WJS3_TRIPS Uncharacterized protein OS=Trichinella pseudospiralis OX=6337 GN=T4E_3400 PE=4 SV=1
LL1 pKa = 7.21ARR3 pKa = 11.84GPPVRR8 pKa = 11.84RR9 pKa = 11.84RR10 pKa = 11.84SKK12 pKa = 9.79LTTPAPVPRR21 pKa = 11.84WTRR24 pKa = 11.84ATSTSTWSARR34 pKa = 11.84TVTTRR39 pKa = 11.84RR40 pKa = 11.84AGRR43 pKa = 11.84FRR45 pKa = 11.84TCRR48 pKa = 11.84PSRR51 pKa = 11.84SRR53 pKa = 11.84NTSAHH58 pKa = 6.25RR59 pKa = 11.84RR60 pKa = 11.84SQPSWCPRR68 pKa = 11.84SNIRR72 pKa = 11.84TLGQLPMTTTRR83 pKa = 11.84WRR85 pKa = 11.84WKK87 pKa = 10.25RR88 pKa = 11.84MPLRR92 pKa = 11.84SRR94 pKa = 11.84CRR96 pKa = 11.84ILTTSATRR104 pKa = 11.84TSISTSTAAASAARR118 pKa = 11.84RR119 pKa = 11.84PTLRR123 pKa = 11.84TAPP126 pKa = 3.71

Molecular weight: 14.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10629

4285

14914

6968983

30

12697

467.3

52.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.39 ± 0.016

2.7 ± 0.018

5.267 ± 0.014

6.407 ± 0.027

4.586 ± 0.016

4.951 ± 0.023

2.424 ± 0.008

5.599 ± 0.016

6.063 ± 0.02

9.86 ± 0.028

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.438 ± 0.009

5.044 ± 0.012

4.241 ± 0.021

4.305 ± 0.016

5.431 ± 0.016

8.274 ± 0.02

5.219 ± 0.015

6.397 ± 0.013

1.207 ± 0.006

3.145 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski