Lutibaculum baratangense AMV1

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Tepidamorphaceae; Lutibaculum; Lutibaculum baratangense

Average proteome isoelectric point is 6.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4164 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|V4R2N0|V4R2N0_9RHIZ Uncharacterized protein OS=Lutibaculum baratangense AMV1 OX=631454 GN=N177_1071 PE=4 SV=1
MM1 pKa = 7.05NRR3 pKa = 11.84FVRR6 pKa = 11.84TLTLGAAVAVLATAANAADD25 pKa = 3.36APYY28 pKa = 10.04YY29 pKa = 10.28DD30 pKa = 4.18KK31 pKa = 11.58NVVVSPAPVSVTDD44 pKa = 3.29WTGMYY49 pKa = 10.14VGVFGGYY56 pKa = 10.0GGGDD60 pKa = 3.24FEE62 pKa = 5.57YY63 pKa = 9.43PFSVGSPALLSGQVDD78 pKa = 3.8MSAGGFVGGAQIGFDD93 pKa = 3.65WQASDD98 pKa = 3.5AFVVGVVADD107 pKa = 4.15IAWSDD112 pKa = 3.15ISDD115 pKa = 3.7EE116 pKa = 4.41VSVSLAAATDD126 pKa = 4.79PITRR130 pKa = 11.84VNGSLGTDD138 pKa = 3.58LNYY141 pKa = 10.6FGTIRR146 pKa = 11.84ARR148 pKa = 11.84AGWLVTPDD156 pKa = 3.07ALLYY160 pKa = 8.53VTGGAAYY167 pKa = 10.26GEE169 pKa = 4.56TEE171 pKa = 4.17SALSLSASGAVDD183 pKa = 3.85GSFGASTSDD192 pKa = 3.66TDD194 pKa = 3.53WGWTVGAGMEE204 pKa = 3.98YY205 pKa = 10.29RR206 pKa = 11.84ITEE209 pKa = 4.02NVSFEE214 pKa = 4.19TEE216 pKa = 3.96YY217 pKa = 11.13LYY219 pKa = 11.48VDD221 pKa = 4.62LGSKK225 pKa = 8.04TLYY228 pKa = 10.73SGDD231 pKa = 3.89VFDD234 pKa = 6.26LPARR238 pKa = 11.84LDD240 pKa = 3.93LDD242 pKa = 3.72TSFHH246 pKa = 5.28VVRR249 pKa = 11.84AGVNFKK255 pKa = 11.3FNMFF259 pKa = 3.72

Molecular weight: 27.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|V4RAY5|V4RAY5_9RHIZ Transcription regulator OS=Lutibaculum baratangense AMV1 OX=631454 GN=N177_3700 PE=4 SV=1
MM1 pKa = 7.41AAALGTGSISRR12 pKa = 11.84LRR14 pKa = 11.84TLRR17 pKa = 11.84ARR19 pKa = 11.84ATLFLIRR26 pKa = 11.84NKK28 pKa = 9.96FSNRR32 pKa = 11.84KK33 pKa = 8.35RR34 pKa = 11.84VRR36 pKa = 11.84AGWRR40 pKa = 11.84HH41 pKa = 3.76GHH43 pKa = 6.16GPSSPPAGTRR53 pKa = 11.84RR54 pKa = 11.84PSAQQ58 pKa = 2.93

Molecular weight: 6.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4164

0

4164

1287530

37

2455

309.2

33.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.56 ± 0.056

0.818 ± 0.012

5.596 ± 0.033

6.739 ± 0.039

3.621 ± 0.026

9.014 ± 0.036

2.076 ± 0.018

4.714 ± 0.032

2.509 ± 0.028

10.184 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.473 ± 0.018

2.135 ± 0.018

5.342 ± 0.03

2.809 ± 0.023

7.963 ± 0.044

5.114 ± 0.026

5.06 ± 0.028

7.853 ± 0.033

1.318 ± 0.017

2.101 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski