Terriglobus albidus

Taxonomy: cellular organisms; Bacteria; Acidobacteria; Acidobacteriia; Acidobacteriales; Acidobacteriaceae; Terriglobus

Average proteome isoelectric point is 6.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4970 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5B9EGS6|A0A5B9EGS6_9BACT Glycerophosphodiester phosphodiesterase OS=Terriglobus albidus OX=1592106 GN=FTW19_21595 PE=4 SV=1
MM1 pKa = 8.02RR2 pKa = 11.84FPFVPVLLLLASSSILPAQTNLSFEE27 pKa = 4.62LSRR30 pKa = 11.84DD31 pKa = 3.1TYY33 pKa = 10.07MAFGVEE39 pKa = 4.98AMAQGDD45 pKa = 4.07FNGDD49 pKa = 3.51GKK51 pKa = 10.23PDD53 pKa = 3.47MVFGGGSSFTVVTLRR68 pKa = 11.84LGNGDD73 pKa = 3.66GTFQPPITVGQADD86 pKa = 3.62SSEE89 pKa = 4.54VEE91 pKa = 4.87DD92 pKa = 5.04IAAADD97 pKa = 3.99LNQDD101 pKa = 3.1GKK103 pKa = 11.47LDD105 pKa = 4.19VIVLCIGGTFDD116 pKa = 4.19VFLGNGDD123 pKa = 4.08GSFQPAIAVATAGSPRR139 pKa = 11.84AMAVGDD145 pKa = 3.74FNGDD149 pKa = 3.35QRR151 pKa = 11.84PDD153 pKa = 3.32LAIGDD158 pKa = 4.18SQGSVEE164 pKa = 4.82IFNNTDD170 pKa = 2.46GKK172 pKa = 10.72NFVLSNTVPIDD183 pKa = 3.36PTRR186 pKa = 11.84DD187 pKa = 3.16ILNVKK192 pKa = 10.37AGDD195 pKa = 3.79FDD197 pKa = 6.21DD198 pKa = 6.49DD199 pKa = 4.23GVTNLAVLTSDD210 pKa = 4.12SAYY213 pKa = 10.86ALWNDD218 pKa = 3.41GAGNFRR224 pKa = 11.84KK225 pKa = 9.82SALSAYY231 pKa = 7.36TNPAGLNVGDD241 pKa = 4.69LNQDD245 pKa = 2.83GMTDD249 pKa = 2.98ILVSYY254 pKa = 9.63DD255 pKa = 3.41CHH257 pKa = 7.09PNPQYY262 pKa = 10.17PGPKK266 pKa = 10.06GPISTCEE273 pKa = 3.98GVDD276 pKa = 3.26VFYY279 pKa = 10.88GQGQQKK285 pKa = 7.79TFEE288 pKa = 4.12RR289 pKa = 11.84HH290 pKa = 5.83IITADD295 pKa = 3.19TVGAARR301 pKa = 11.84YY302 pKa = 8.47LWAADD307 pKa = 3.61VNGDD311 pKa = 4.11GIGDD315 pKa = 4.64LVTGTSDD322 pKa = 3.64QNGSQTGLFIWLGHH336 pKa = 6.82PDD338 pKa = 3.38GSFDD342 pKa = 3.39QAASRR347 pKa = 11.84FIATSSGTGQLVVADD362 pKa = 4.81FNRR365 pKa = 11.84DD366 pKa = 3.03GMIDD370 pKa = 4.09FAQALPGDD378 pKa = 4.43AQTQIYY384 pKa = 10.49LNATNRR390 pKa = 11.84APCATSQINPTVTVCQPVDD409 pKa = 3.6NTYY412 pKa = 11.08LPAPAIRR419 pKa = 11.84VTANAYY425 pKa = 7.85DD426 pKa = 4.14TNQVTAMQLYY436 pKa = 9.42VNGDD440 pKa = 3.66LVYY443 pKa = 10.53SRR445 pKa = 11.84PVSGFNRR452 pKa = 11.84TFQLGEE458 pKa = 3.84GSFNLVTKK466 pKa = 10.17AWDD469 pKa = 3.57YY470 pKa = 11.69AGLNFRR476 pKa = 11.84SVRR479 pKa = 11.84HH480 pKa = 3.9VTLYY484 pKa = 10.8NGTPGSVCAAALGTAEE500 pKa = 3.95ICLPSGATSTSPVHH514 pKa = 6.31IVGNGYY520 pKa = 7.88TSYY523 pKa = 11.35VPTAAQLYY531 pKa = 9.43IDD533 pKa = 4.54GNLVINNTSCNDD545 pKa = 3.28YY546 pKa = 10.22GACPGGSSLVDD557 pKa = 3.53TYY559 pKa = 11.49QGLSSGSHH567 pKa = 6.28DD568 pKa = 4.94LVFKK572 pKa = 10.94LWDD575 pKa = 3.74ANGNIYY581 pKa = 10.7SADD584 pKa = 3.25KK585 pKa = 9.88TVSVEE590 pKa = 3.82

Molecular weight: 61.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5B9E5V1|A0A5B9E5V1_9BACT Ribonuclease J OS=Terriglobus albidus OX=1592106 GN=rnj PE=3 SV=1
MM1 pKa = 8.0PKK3 pKa = 9.02RR4 pKa = 11.84TFQPNRR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84SKK15 pKa = 10.13VHH17 pKa = 5.86GFLSRR22 pKa = 11.84MASKK26 pKa = 10.6AGRR29 pKa = 11.84AVLSRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.19GRR40 pKa = 11.84HH41 pKa = 5.72KK42 pKa = 10.29IAVSAGFRR50 pKa = 11.84DD51 pKa = 3.66

Molecular weight: 5.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4970

0

4970

1854419

26

3063

373.1

40.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.626 ± 0.038

0.838 ± 0.01

4.963 ± 0.03

5.351 ± 0.044

3.916 ± 0.02

8.015 ± 0.037

2.249 ± 0.017

5.046 ± 0.024

3.758 ± 0.031

9.915 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.271 ± 0.016

3.511 ± 0.039

5.248 ± 0.022

3.986 ± 0.024

6.157 ± 0.039

6.446 ± 0.041

6.243 ± 0.049

7.204 ± 0.029

1.417 ± 0.015

2.841 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski