Arthrobacter phage Racecar

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 5.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 259 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5J6TN61|A0A5J6TN61_9CAUD HNH endonuclease OS=Arthrobacter phage Racecar OX=2599831 GN=252 PE=4 SV=1
MM1 pKa = 7.56AVNFSTDD8 pKa = 3.64DD9 pKa = 3.5ILDD12 pKa = 3.91LRR14 pKa = 11.84DD15 pKa = 3.36LAEE18 pKa = 4.14TARR21 pKa = 11.84EE22 pKa = 3.72ASAILEE28 pKa = 4.52DD29 pKa = 4.53DD30 pKa = 4.12EE31 pKa = 4.79QDD33 pKa = 3.34EE34 pKa = 5.05SEE36 pKa = 5.1KK37 pKa = 11.07EE38 pKa = 3.96DD39 pKa = 3.45AKK41 pKa = 10.63EE42 pKa = 3.85TLEE45 pKa = 4.56ALASMLSDD53 pKa = 2.97MGYY56 pKa = 9.89SVEE59 pKa = 4.37ALEE62 pKa = 4.6EE63 pKa = 4.07DD64 pKa = 3.73AVADD68 pKa = 4.01EE69 pKa = 4.76LQSIGNNYY77 pKa = 9.22EE78 pKa = 3.83CTLIAEE84 pKa = 4.57SHH86 pKa = 5.46FQSYY90 pKa = 10.31CEE92 pKa = 4.34EE93 pKa = 4.11LCEE96 pKa = 4.92DD97 pKa = 4.53LGYY100 pKa = 10.79LPKK103 pKa = 10.66DD104 pKa = 3.44LPAFLSNNINWSGVADD120 pKa = 4.73DD121 pKa = 6.19LKK123 pKa = 11.26DD124 pKa = 3.93DD125 pKa = 4.08YY126 pKa = 12.08NEE128 pKa = 4.12VEE130 pKa = 4.95LDD132 pKa = 3.32GEE134 pKa = 4.92TYY136 pKa = 10.69FIRR139 pKa = 11.84SFF141 pKa = 3.3

Molecular weight: 15.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5J6TN24|A0A5J6TN24_9CAUD Minor tail protein OS=Arthrobacter phage Racecar OX=2599831 GN=175 PE=4 SV=1
MM1 pKa = 6.43TTRR4 pKa = 11.84GTSNTNDD11 pKa = 3.3RR12 pKa = 11.84GSAKK16 pKa = 9.78SRR18 pKa = 11.84RR19 pKa = 11.84VRR21 pKa = 11.84KK22 pKa = 9.44QWVLDD27 pKa = 3.4VFGNGFIAFCSFMGCKK43 pKa = 10.0EE44 pKa = 3.95EE45 pKa = 4.39LTFEE49 pKa = 4.63TITIDD54 pKa = 3.45RR55 pKa = 11.84YY56 pKa = 10.26PIPGCEE62 pKa = 3.53GGTYY66 pKa = 10.09KK67 pKa = 10.64RR68 pKa = 11.84GNIRR72 pKa = 11.84PMCAFHH78 pKa = 6.95NSSTGSLLGHH88 pKa = 5.92QRR90 pKa = 11.84RR91 pKa = 11.84KK92 pKa = 9.63QRR94 pKa = 11.84ASS96 pKa = 2.99

Molecular weight: 10.8 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

259

0

259

52617

34

4266

203.2

22.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.43 ± 0.708

0.69 ± 0.071

6.213 ± 0.202

7.347 ± 0.477

3.605 ± 0.143

7.422 ± 0.218

1.731 ± 0.124

5.365 ± 0.171

5.895 ± 0.272

7.534 ± 0.28

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.313 ± 0.131

4.219 ± 0.137

4.297 ± 0.238

3.109 ± 0.111

5.038 ± 0.253

6.612 ± 0.291

7.195 ± 0.45

6.96 ± 0.204

1.752 ± 0.094

3.271 ± 0.154
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski