Aureimonas altamirensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomic

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3519 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B1Q2E7|A0A0B1Q2E7_9RHIZ Uncharacterized protein OS=Aureimonas altamirensis OX=370622 GN=LA66_10610 PE=4 SV=1
MM1 pKa = 7.49NIKK4 pKa = 10.39SLLLGSAAALVAVSGARR21 pKa = 11.84AADD24 pKa = 4.4AIVMVEE30 pKa = 4.17PEE32 pKa = 3.81PVEE35 pKa = 3.97YY36 pKa = 11.07VRR38 pKa = 11.84VCDD41 pKa = 3.81VYY43 pKa = 10.81GTGFYY48 pKa = 10.01YY49 pKa = 9.98IPGTEE54 pKa = 4.14TCIKK58 pKa = 8.83TSGYY62 pKa = 10.83LRR64 pKa = 11.84FQYY67 pKa = 10.64NVAGSPAGNSEE78 pKa = 3.64GDD80 pKa = 3.67DD81 pKa = 3.8YY82 pKa = 11.79QALSSVRR89 pKa = 11.84ARR91 pKa = 11.84LNLDD95 pKa = 2.98VRR97 pKa = 11.84EE98 pKa = 4.01EE99 pKa = 4.52TEE101 pKa = 4.23LGTLRR106 pKa = 11.84AYY108 pKa = 10.36FRR110 pKa = 11.84LQAQNTGASPEE121 pKa = 4.53DD122 pKa = 3.94EE123 pKa = 4.21FAMEE127 pKa = 4.25QGYY130 pKa = 8.6LQLGGFLAGYY140 pKa = 10.22RR141 pKa = 11.84DD142 pKa = 4.32TLWSSDD148 pKa = 2.76IGGIEE153 pKa = 4.96DD154 pKa = 5.08GLPTDD159 pKa = 4.89DD160 pKa = 5.75DD161 pKa = 4.69LPIGDD166 pKa = 5.05FNTNQISYY174 pKa = 8.46TFATGGFAATLGLEE188 pKa = 4.38DD189 pKa = 5.96DD190 pKa = 4.38GTGDD194 pKa = 3.63IAPDD198 pKa = 3.34VHH200 pKa = 6.86GKK202 pKa = 10.3LSYY205 pKa = 8.91TGAWGGVFLSAVYY218 pKa = 10.68DD219 pKa = 3.59EE220 pKa = 4.89TFNAEE225 pKa = 4.16DD226 pKa = 3.5VTDD229 pKa = 4.91LFGIDD234 pKa = 5.57DD235 pKa = 4.92LDD237 pKa = 4.37LPAFFPFIPEE247 pKa = 3.84RR248 pKa = 11.84DD249 pKa = 3.3VDD251 pKa = 3.87GSNDD255 pKa = 3.23AFALKK260 pKa = 10.53AGLTLQDD267 pKa = 4.62LLVADD272 pKa = 4.2STLKK276 pKa = 10.71VDD278 pKa = 3.81GHH280 pKa = 6.08WASDD284 pKa = 3.44PTSYY288 pKa = 11.4AVISGFTSAGGILPSNATLEE308 pKa = 4.26NPTPGAFPLVLEE320 pKa = 4.45WSVGAGYY327 pKa = 8.38SQKK330 pKa = 10.28FNRR333 pKa = 11.84VTAGVSGRR341 pKa = 11.84YY342 pKa = 9.77GEE344 pKa = 4.26TFDD347 pKa = 3.88YY348 pKa = 11.27AFVAPEE354 pKa = 3.99VPGGFVFSSADD365 pKa = 3.19YY366 pKa = 8.63WAVVGDD372 pKa = 3.74IGYY375 pKa = 10.2DD376 pKa = 3.1LTANMNVLAEE386 pKa = 4.17VKK388 pKa = 10.08YY389 pKa = 10.88QNIDD393 pKa = 3.37FGGVASDD400 pKa = 4.04DD401 pKa = 3.68QTSGFLRR408 pKa = 11.84FQRR411 pKa = 11.84NFF413 pKa = 3.06

Molecular weight: 44.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B1Q233|A0A0B1Q233_9RHIZ DNA-3-methyladenine glycosidase OS=Aureimonas altamirensis OX=370622 GN=LA66_19850 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 8.95RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.63GFRR19 pKa = 11.84SRR21 pKa = 11.84MATTGGRR28 pKa = 11.84RR29 pKa = 11.84VIASRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.73GRR39 pKa = 11.84KK40 pKa = 8.92RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3519

0

3519

1115690

26

2158

317.0

34.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.011 ± 0.058

0.76 ± 0.012

5.846 ± 0.038

5.653 ± 0.04

3.785 ± 0.03

8.925 ± 0.033

1.973 ± 0.02

5.197 ± 0.028

2.525 ± 0.029

10.154 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.587 ± 0.021

2.335 ± 0.021

5.141 ± 0.027

2.973 ± 0.023

7.558 ± 0.036

5.344 ± 0.028

5.214 ± 0.029

7.604 ± 0.032

1.235 ± 0.013

2.178 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski