Acetobacteroides hydrogenigenes

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Acetobacteroides

Average proteome isoelectric point is 6.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3211 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R2EIB1|A0A4R2EIB1_9BACT Protein-export membrane protein SecG OS=Acetobacteroides hydrogenigenes OX=979970 GN=CLV25_11454 PE=3 SV=1
MM1 pKa = 7.19YY2 pKa = 7.77WTLEE6 pKa = 4.11LASKK10 pKa = 11.0LEE12 pKa = 4.24DD13 pKa = 4.09APWPASKK20 pKa = 11.07EE21 pKa = 3.94EE22 pKa = 4.66LIDD25 pKa = 3.41YY26 pKa = 7.58ATRR29 pKa = 11.84SGAPLEE35 pKa = 4.43VIEE38 pKa = 4.42NLQEE42 pKa = 4.61IEE44 pKa = 4.57DD45 pKa = 3.67EE46 pKa = 4.53GEE48 pKa = 3.89IYY50 pKa = 10.67EE51 pKa = 4.65SIEE54 pKa = 4.99DD55 pKa = 3.43IWPDD59 pKa = 3.76YY60 pKa = 10.16PSKK63 pKa = 11.32DD64 pKa = 2.97DD65 pKa = 3.97FFFNEE70 pKa = 4.51DD71 pKa = 3.17EE72 pKa = 4.46YY73 pKa = 11.99

Molecular weight: 8.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R2E3A0|A0A4R2E3A0_9BACT Tetratricopeptide repeat protein OS=Acetobacteroides hydrogenigenes OX=979970 GN=CLV25_1226 PE=4 SV=1
MM1 pKa = 7.68LNRR4 pKa = 11.84VSLQRR9 pKa = 11.84TVRR12 pKa = 11.84NSFFMRR18 pKa = 11.84GNHH21 pKa = 5.89FSTFGSLFLNRR32 pKa = 11.84GSHH35 pKa = 7.15LLMLGNHH42 pKa = 5.67FFIRR46 pKa = 11.84GNHH49 pKa = 5.53FPTSGNHH56 pKa = 5.51FLMRR60 pKa = 11.84GNHH63 pKa = 6.0FLTSRR68 pKa = 11.84NHH70 pKa = 5.93FLMRR74 pKa = 11.84GNHH77 pKa = 5.58FPTFRR82 pKa = 11.84SLFLKK87 pKa = 10.47RR88 pKa = 11.84GSHH91 pKa = 6.99LLMLGNHH98 pKa = 5.96FLIRR102 pKa = 11.84GNHH105 pKa = 5.51FPTSGNHH112 pKa = 5.1FLMRR116 pKa = 11.84GSHH119 pKa = 6.89FLTFGNHH126 pKa = 5.39FLMRR130 pKa = 11.84GNHH133 pKa = 6.25FLTSGNRR140 pKa = 11.84FLRR143 pKa = 11.84RR144 pKa = 11.84GAKK147 pKa = 8.01TT148 pKa = 3.08

Molecular weight: 17.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3211

0

3211

1096128

29

3629

341.4

38.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.509 ± 0.037

0.954 ± 0.014

5.186 ± 0.028

6.115 ± 0.05

4.762 ± 0.028

6.878 ± 0.044

1.663 ± 0.017

7.168 ± 0.039

7.096 ± 0.038

9.235 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.493 ± 0.022

5.203 ± 0.042

3.684 ± 0.023

3.232 ± 0.023

4.271 ± 0.033

6.861 ± 0.045

5.54 ± 0.057

6.991 ± 0.038

1.079 ± 0.017

4.079 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski