Gammapapillomavirus 8

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Gammapapillomavirus

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2ALG0|A0A2D2ALG0_9PAPI Minor capsid protein L2 OS=Gammapapillomavirus 8 OX=1175850 GN=L2 PE=3 SV=1
MM1 pKa = 6.42YY2 pKa = 7.79TAKK5 pKa = 10.2RR6 pKa = 11.84VKK8 pKa = 9.97RR9 pKa = 11.84DD10 pKa = 3.33SPEE13 pKa = 3.67NIYY16 pKa = 10.12RR17 pKa = 11.84HH18 pKa = 5.92CKK20 pKa = 9.1IAGTCPPDD28 pKa = 3.44VEE30 pKa = 5.18NKK32 pKa = 9.9IEE34 pKa = 4.0QNTLADD40 pKa = 4.01RR41 pKa = 11.84LLKK44 pKa = 10.46IFGSIIYY51 pKa = 10.28LGGLGIGSGRR61 pKa = 11.84GTGAATGFRR70 pKa = 11.84PLPDD74 pKa = 3.99EE75 pKa = 4.84VPLPDD80 pKa = 3.81TNIITDD86 pKa = 3.51SSTLPEE92 pKa = 4.06TVRR95 pKa = 11.84PSLRR99 pKa = 11.84PRR101 pKa = 11.84PSRR104 pKa = 11.84PNTFGVPLDD113 pKa = 5.03PISSADD119 pKa = 3.6NIPRR123 pKa = 11.84IVRR126 pKa = 11.84PTEE129 pKa = 3.59PAIVPLSEE137 pKa = 5.1GGLPDD142 pKa = 3.46PTVISTGVEE151 pKa = 3.83SGAGVGDD158 pKa = 3.85YY159 pKa = 10.67EE160 pKa = 4.38VLTNIFVDD168 pKa = 3.97DD169 pKa = 3.89ALGAVGGHH177 pKa = 5.46PTVTSGVNEE186 pKa = 4.29NIALLEE192 pKa = 3.99ITPVEE197 pKa = 4.69HH198 pKa = 6.05IPSRR202 pKa = 11.84ITYY205 pKa = 6.96TTTDD209 pKa = 2.74VDD211 pKa = 3.23TGYY214 pKa = 8.87TFIRR218 pKa = 11.84SSLPADD224 pKa = 3.65PDD226 pKa = 3.55MNVFVDD232 pKa = 3.74PRR234 pKa = 11.84YY235 pKa = 10.16SGTVVGDD242 pKa = 3.86NIEE245 pKa = 4.4LEE247 pKa = 4.65AIHH250 pKa = 6.79NIDD253 pKa = 3.09QFEE256 pKa = 4.21IEE258 pKa = 4.65EE259 pKa = 4.35AGQPQTSTPSRR270 pKa = 11.84ISDD273 pKa = 3.51WAKK276 pKa = 10.41LRR278 pKa = 11.84AQEE281 pKa = 4.25FYY283 pKa = 11.49NRR285 pKa = 11.84FIQQMPTRR293 pKa = 11.84NIDD296 pKa = 3.63FLGQASRR303 pKa = 11.84AVQFEE308 pKa = 4.18FEE310 pKa = 4.24NPAFEE315 pKa = 5.03SDD317 pKa = 3.13VSLQFEE323 pKa = 4.09RR324 pKa = 11.84DD325 pKa = 3.77VQEE328 pKa = 4.14LAAAPDD334 pKa = 3.52EE335 pKa = 4.44AFTDD339 pKa = 3.89IVRR342 pKa = 11.84LGRR345 pKa = 11.84PVLSEE350 pKa = 4.12TPAGNVRR357 pKa = 11.84VSRR360 pKa = 11.84LGTRR364 pKa = 11.84GGMRR368 pKa = 11.84TRR370 pKa = 11.84SGTILKK376 pKa = 10.2QKK378 pKa = 9.57VHH380 pKa = 6.54FFYY383 pKa = 11.0DD384 pKa = 3.92LSPIAAVDD392 pKa = 3.68EE393 pKa = 4.55SAATNIEE400 pKa = 3.84LANFGEE406 pKa = 4.52SSDD409 pKa = 3.23ILTIVDD415 pKa = 3.96EE416 pKa = 4.62LSGGRR421 pKa = 11.84PINAFEE427 pKa = 4.79EE428 pKa = 4.34YY429 pKa = 10.76DD430 pKa = 3.56EE431 pKa = 4.43TALLNTDD438 pKa = 3.16EE439 pKa = 4.97ATFQNAHH446 pKa = 6.41LEE448 pKa = 4.38VYY450 pKa = 10.06TDD452 pKa = 4.64DD453 pKa = 5.28LEE455 pKa = 4.51EE456 pKa = 4.16PQIIPSLITDD466 pKa = 3.8VTPKK470 pKa = 10.77NFVNPYY476 pKa = 7.64ITDD479 pKa = 3.41ILVSYY484 pKa = 9.47PSIIDD489 pKa = 3.58NFPFTPIVPTTPLSPTVQIDD509 pKa = 3.58AFGSDD514 pKa = 4.44YY515 pKa = 11.04YY516 pKa = 11.08LHH518 pKa = 7.28PSLLRR523 pKa = 11.84RR524 pKa = 11.84KK525 pKa = 8.48KK526 pKa = 10.46RR527 pKa = 11.84KK528 pKa = 7.58WFEE531 pKa = 3.63MSS533 pKa = 2.85

Molecular weight: 58.54 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2ALE6|A0A2D2ALE6_9PAPI Protein E6 OS=Gammapapillomavirus 8 OX=1175850 GN=E6 PE=3 SV=1
MM1 pKa = 7.29ARR3 pKa = 11.84KK4 pKa = 9.9EE5 pKa = 4.03EE6 pKa = 4.28TQEE9 pKa = 3.98SLTEE13 pKa = 4.23RR14 pKa = 11.84FDD16 pKa = 4.04ALQEE20 pKa = 4.78AILTMIEE27 pKa = 4.09ANATDD32 pKa = 4.05LASHH36 pKa = 6.8LKK38 pKa = 9.06YY39 pKa = 9.38WDD41 pKa = 3.5YY42 pKa = 11.33VRR44 pKa = 11.84KK45 pKa = 10.18EE46 pKa = 4.0NVTLYY51 pKa = 10.2YY52 pKa = 10.58ARR54 pKa = 11.84KK55 pKa = 9.46CGYY58 pKa = 9.62NRR60 pKa = 11.84LGLQPTPTPAVSEE73 pKa = 4.46YY74 pKa = 10.35NAKK77 pKa = 9.88QAIKK81 pKa = 8.62MQMLIRR87 pKa = 11.84SLMTSQYY94 pKa = 11.37ADD96 pKa = 3.56EE97 pKa = 5.09HH98 pKa = 5.82WTLSDD103 pKa = 3.49ISAEE107 pKa = 4.35VINTQPRR114 pKa = 11.84DD115 pKa = 3.59CFKK118 pKa = 10.73KK119 pKa = 9.51QGYY122 pKa = 6.22TVEE125 pKa = 3.65VWYY128 pKa = 10.47DD129 pKa = 3.29NDD131 pKa = 3.41RR132 pKa = 11.84SKK134 pKa = 11.55AFPYY138 pKa = 9.83TNWTAIYY145 pKa = 9.96YY146 pKa = 9.87QDD148 pKa = 5.36EE149 pKa = 4.23NGNWHH154 pKa = 5.62KK155 pKa = 9.92TEE157 pKa = 4.05GQVDD161 pKa = 4.01ANGMYY166 pKa = 10.0YY167 pKa = 10.19KK168 pKa = 10.2EE169 pKa = 4.28VNGDD173 pKa = 3.34LVYY176 pKa = 10.35FHH178 pKa = 7.19LFGPDD183 pKa = 3.03AEE185 pKa = 5.15KK186 pKa = 11.11YY187 pKa = 10.45GSTGEE192 pKa = 4.07WTVHH196 pKa = 5.99FKK198 pKa = 10.86QSTIVSSSSSFAKK211 pKa = 10.43RR212 pKa = 11.84SPEE215 pKa = 3.49PLKK218 pKa = 10.69RR219 pKa = 11.84KK220 pKa = 9.49RR221 pKa = 11.84DD222 pKa = 3.57EE223 pKa = 4.57SSPSTSWDD231 pKa = 3.78TPSTTQDD238 pKa = 2.59IVEE241 pKa = 4.3RR242 pKa = 11.84RR243 pKa = 11.84SEE245 pKa = 4.04RR246 pKa = 11.84QTTVSSSSEE255 pKa = 3.64ANLRR259 pKa = 11.84PRR261 pKa = 11.84RR262 pKa = 11.84GGEE265 pKa = 3.72QGEE268 pKa = 4.61LPTTTKK274 pKa = 10.27RR275 pKa = 11.84RR276 pKa = 11.84RR277 pKa = 11.84LQSEE281 pKa = 4.44LSAVPTPDD289 pKa = 3.2QVGTRR294 pKa = 11.84HH295 pKa = 6.27RR296 pKa = 11.84SAPRR300 pKa = 11.84SNLTRR305 pKa = 11.84LQRR308 pKa = 11.84LQIEE312 pKa = 4.48SWDD315 pKa = 3.79PPILIVKK322 pKa = 7.33GHH324 pKa = 6.62PNSLKK329 pKa = 9.9CWRR332 pKa = 11.84NRR334 pKa = 11.84LRR336 pKa = 11.84STANSLLYY344 pKa = 10.11EE345 pKa = 4.18YY346 pKa = 11.07SSTVWKK352 pKa = 9.91WIGDD356 pKa = 3.81NNNLLGSRR364 pKa = 11.84MLLSFTSVTQRR375 pKa = 11.84NQFLKK380 pKa = 10.45VVKK383 pKa = 9.22PPKK386 pKa = 10.25GSVFALGSLDD396 pKa = 3.67SLL398 pKa = 4.35

Molecular weight: 45.67 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2421

97

605

345.9

39.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.204 ± 0.555

1.983 ± 0.576

6.444 ± 0.37

6.237 ± 0.565

4.75 ± 0.505

5.411 ± 0.466

1.983 ± 0.254

5.494 ± 0.803

5.328 ± 0.756

9.583 ± 0.721

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.528 ± 0.19

5.081 ± 0.337

5.989 ± 0.902

4.585 ± 0.575

5.37 ± 0.669

7.683 ± 0.596

6.939 ± 0.498

5.618 ± 0.544

1.363 ± 0.356

3.428 ± 0.377
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski