Blueberry red ringspot virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Soymovirus

Average proteome isoelectric point is 6.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q919G6|Q919G6_9VIRU Uncharacterized protein OS=Blueberry red ringspot virus OX=172220 PE=4 SV=2
MM1 pKa = 7.59TEE3 pKa = 4.05GNGNGKK9 pKa = 8.42LTEE12 pKa = 4.7KK13 pKa = 10.07IEE15 pKa = 3.97NMILKK20 pKa = 10.14YY21 pKa = 10.68EE22 pKa = 4.06EE23 pKa = 4.25LEE25 pKa = 4.2KK26 pKa = 10.89VVKK29 pKa = 10.1QVSPEE34 pKa = 3.49ILEE37 pKa = 3.9IKK39 pKa = 9.76EE40 pKa = 3.91QVEE43 pKa = 4.24VEE45 pKa = 3.77NDD47 pKa = 2.79IKK49 pKa = 11.25DD50 pKa = 3.97FNEE53 pKa = 3.62SKK55 pKa = 10.86YY56 pKa = 10.97YY57 pKa = 11.0NNTIRR62 pKa = 11.84GNAQPTKK69 pKa = 10.96EE70 pKa = 4.36MIIDD74 pKa = 3.89NQPEE78 pKa = 4.06PCYY81 pKa = 9.78QTDD84 pKa = 3.39SPFPYY89 pKa = 9.8LYY91 pKa = 9.25HH92 pKa = 6.7TFDD95 pKa = 3.75PQLNNITDD103 pKa = 3.54MLMYY107 pKa = 10.26IIKK110 pKa = 10.17NCCCKK115 pKa = 10.54DD116 pKa = 3.05KK117 pKa = 11.28HH118 pKa = 5.28EE119 pKa = 4.18QRR121 pKa = 11.84EE122 pKa = 4.26KK123 pKa = 10.98QPIIHH128 pKa = 6.56PKK130 pKa = 9.61ILEE133 pKa = 4.18EE134 pKa = 4.49KK135 pKa = 10.36DD136 pKa = 3.5RR137 pKa = 11.84QIKK140 pKa = 10.23DD141 pKa = 3.4LEE143 pKa = 3.97EE144 pKa = 4.98HH145 pKa = 5.69IRR147 pKa = 11.84EE148 pKa = 4.37LEE150 pKa = 3.84EE151 pKa = 4.04HH152 pKa = 6.3RR153 pKa = 11.84CITILDD159 pKa = 3.66LKK161 pKa = 10.69KK162 pKa = 10.95YY163 pKa = 9.96FGNRR167 pKa = 11.84FNEE170 pKa = 4.3RR171 pKa = 11.84EE172 pKa = 4.05DD173 pKa = 3.59KK174 pKa = 11.23KK175 pKa = 10.33PIEE178 pKa = 4.54YY179 pKa = 9.96IEE181 pKa = 4.31DD182 pKa = 3.53QPRR185 pKa = 11.84PSYY188 pKa = 10.42RR189 pKa = 11.84GRR191 pKa = 11.84KK192 pKa = 8.06PLWPQIII199 pKa = 3.8

Molecular weight: 23.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q919G1|Q919G1_9VIRU Uncharacterized protein OS=Blueberry red ringspot virus OX=172220 PE=4 SV=1
MM1 pKa = 7.53KK2 pKa = 10.17PMIIMGVDD10 pKa = 3.38VPIEE14 pKa = 3.88RR15 pKa = 11.84SKK17 pKa = 11.13LKK19 pKa = 10.7QIAKK23 pKa = 9.8EE24 pKa = 4.08GKK26 pKa = 8.03LTLKK30 pKa = 10.27SGQGIKK36 pKa = 10.29SEE38 pKa = 4.64GIFTIYY44 pKa = 10.19HH45 pKa = 4.2QEE47 pKa = 3.69KK48 pKa = 10.72YY49 pKa = 10.53IIFLGKK55 pKa = 8.55FTSEE59 pKa = 3.89QPLEE63 pKa = 3.81ISTAVGQEE71 pKa = 3.79PLSLVNGKK79 pKa = 9.77QIADD83 pKa = 5.04RR84 pKa = 11.84IAKK87 pKa = 8.03MKK89 pKa = 10.77QSDD92 pKa = 3.89KK93 pKa = 11.47EE94 pKa = 4.14KK95 pKa = 9.96IQYY98 pKa = 9.16IHH100 pKa = 7.33LSTIQILVKK109 pKa = 9.69STYY112 pKa = 11.15ASIDD116 pKa = 3.36TPMDD120 pKa = 3.99IIVIDD125 pKa = 3.56NRR127 pKa = 11.84IISKK131 pKa = 10.15NKK133 pKa = 8.79KK134 pKa = 7.91EE135 pKa = 3.94QVLGIIKK142 pKa = 10.51GNLKK146 pKa = 10.54YY147 pKa = 10.71GVIKK151 pKa = 10.6FDD153 pKa = 3.46VSLHH157 pKa = 4.93FAIPLVTKK165 pKa = 10.49NLSQSIGILYY175 pKa = 9.98KK176 pKa = 9.06FHH178 pKa = 7.05RR179 pKa = 11.84QDD181 pKa = 3.46LMEE184 pKa = 5.88KK185 pKa = 10.25GDD187 pKa = 3.97YY188 pKa = 9.53PLSITYY194 pKa = 10.19SVGYY198 pKa = 9.91ALSNSHH204 pKa = 6.9PLCCYY209 pKa = 9.81LDD211 pKa = 3.67QEE213 pKa = 4.76IKK215 pKa = 10.8HH216 pKa = 6.39IDD218 pKa = 3.73DD219 pKa = 4.0LFKK222 pKa = 10.37NTSIKK227 pKa = 10.75LVTFEE232 pKa = 5.08KK233 pKa = 10.82KK234 pKa = 10.32NEE236 pKa = 3.75NSNDD240 pKa = 2.99IFRR243 pKa = 11.84APPVRR248 pKa = 11.84MIKK251 pKa = 10.06PRR253 pKa = 11.84EE254 pKa = 4.54DD255 pKa = 2.94ISKK258 pKa = 8.7PTITDD263 pKa = 3.0VTDD266 pKa = 3.73PLKK269 pKa = 9.9PTTSSFIQLAPPPNLHH285 pKa = 6.78RR286 pKa = 11.84KK287 pKa = 8.34PEE289 pKa = 4.11SMQNLEE295 pKa = 4.16KK296 pKa = 10.58QIQEE300 pKa = 3.87LRR302 pKa = 11.84RR303 pKa = 11.84TVTNLNEE310 pKa = 4.44KK311 pKa = 9.83II312 pKa = 3.77

Molecular weight: 35.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2532

122

657

316.5

37.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.357 ± 0.754

1.185 ± 0.395

4.858 ± 0.4

8.728 ± 0.928

3.712 ± 0.379

3.594 ± 0.172

2.251 ± 0.239

9.716 ± 0.911

10.624 ± 0.429

8.807 ± 1.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.291 ± 0.286

6.003 ± 0.521

4.976 ± 0.321

5.213 ± 0.3

3.949 ± 0.549

6.319 ± 0.621

5.292 ± 0.373

3.397 ± 0.442

0.75 ± 0.329

4.976 ± 0.652
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski