Solimicrobium silvestre

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Solimicrobium

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4741 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S9GZW5|A0A2S9GZW5_9BURK Ribosomal RNA small subunit methyltransferase I OS=Solimicrobium silvestre OX=2099400 GN=rsmI PE=3 SV=1
MM1 pKa = 6.94NTRR4 pKa = 11.84NQTFVKK10 pKa = 10.05KK11 pKa = 10.56ALFAMMFVGASAQAVPFTYY30 pKa = 9.7TGSIVDD36 pKa = 3.66YY37 pKa = 9.61TITTSGVYY45 pKa = 10.54DD46 pKa = 3.83LTAAGAQGGSGNGVGTTGGLGAQISGDD73 pKa = 3.58LFLTTGTQLGIVVGGQGLTGNFGGLAGGGGGGGSFVYY110 pKa = 10.21IIGSTSPLIVAGGGGGAGYY129 pKa = 10.09IDD131 pKa = 3.76ATVGGGGQTTTSGQAGFGAGGGAGGSAGSGGAGGNDD167 pKa = 3.26EE168 pKa = 5.1IGDD171 pKa = 3.77NGGGGGGWGGNGGDD185 pKa = 4.16GVGTTYY191 pKa = 9.93TQTGGAGLGGAGAFSFLAGFGDD213 pKa = 4.68CDD215 pKa = 3.73PSVPACANGGFGGGGGGGWQGGGGGGGYY243 pKa = 9.95SGGGGGDD250 pKa = 3.4GTTDD254 pKa = 3.06GGGGGGSYY262 pKa = 9.94IDD264 pKa = 4.77ASFLSIGSMIGGSDD278 pKa = 3.2TSDD281 pKa = 2.94NGAPLGNANNGFVNIDD297 pKa = 3.53MVLLSNPVPEE307 pKa = 4.88PLTLALMAIGLAGLGFIRR325 pKa = 11.84RR326 pKa = 11.84KK327 pKa = 8.83KK328 pKa = 10.59ARR330 pKa = 11.84II331 pKa = 3.45

Molecular weight: 30.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S9H2A8|A0A2S9H2A8_9BURK PPIC-type PPIASE domain OS=Solimicrobium silvestre OX=2099400 GN=S2091_1271 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 9.97QPSVVRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.57RR14 pKa = 11.84THH16 pKa = 5.79GFRR19 pKa = 11.84ARR21 pKa = 11.84MATRR25 pKa = 11.84GGRR28 pKa = 11.84AVLNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.65GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4741

0

4741

1520618

29

15885

320.7

35.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.218 ± 0.045

0.966 ± 0.016

5.033 ± 0.024

5.177 ± 0.056

3.972 ± 0.033

7.132 ± 0.053

2.252 ± 0.031

6.244 ± 0.036

4.527 ± 0.055

10.378 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.565 ± 0.027

4.272 ± 0.056

4.419 ± 0.022

4.495 ± 0.038

4.844 ± 0.062

6.684 ± 0.06

5.876 ± 0.098

6.892 ± 0.034

1.281 ± 0.014

2.774 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski