Psittacid herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997) (PsHV-1) (Pacheco s disease virus)

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Iltovirus; Psittacid alphaherpesvirus 1

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 72 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q6UDF8|GG_PSHV1 Glycoprotein G OS=Psittacid herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997) OX=670426 GN=gG PE=3 SV=1
MM1 pKa = 7.71LWPAALVAMFALAARR16 pKa = 11.84ARR18 pKa = 11.84EE19 pKa = 4.04IDD21 pKa = 3.64NVTCSVVYY29 pKa = 9.66GSNVARR35 pKa = 11.84ISKK38 pKa = 9.95DD39 pKa = 2.97YY40 pKa = 10.5WLAQEE45 pKa = 4.73GSLVSFMTFEE55 pKa = 4.43NDD57 pKa = 3.13DD58 pKa = 3.47PVYY61 pKa = 10.82FFMGRR66 pKa = 11.84ALGTGASGGKK76 pKa = 9.21YY77 pKa = 9.89LYY79 pKa = 10.49RR80 pKa = 11.84VTRR83 pKa = 11.84DD84 pKa = 2.89NNTNVSHH91 pKa = 5.86VQTSLFIPEE100 pKa = 4.62HH101 pKa = 5.8FNGGILLDD109 pKa = 3.48MGSNYY114 pKa = 8.76THH116 pKa = 7.6DD117 pKa = 4.73AEE119 pKa = 4.61TDD121 pKa = 3.68PEE123 pKa = 4.27FLNARR128 pKa = 11.84YY129 pKa = 9.16LVVNDD134 pKa = 4.1TEE136 pKa = 4.73DD137 pKa = 3.35SVRR140 pKa = 11.84EE141 pKa = 4.05EE142 pKa = 4.17TLGPCPEE149 pKa = 4.19MLRR152 pKa = 11.84TLDD155 pKa = 3.31VSGRR159 pKa = 11.84TTLLYY164 pKa = 9.85PSRR167 pKa = 11.84YY168 pKa = 8.46LHH170 pKa = 6.78ARR172 pKa = 11.84DD173 pKa = 3.26RR174 pKa = 11.84MQVEE178 pKa = 4.38KK179 pKa = 10.51TMDD182 pKa = 3.25TAKK185 pKa = 10.6CVSTSVNLDD194 pKa = 3.17ATVVFSVDD202 pKa = 3.76FPFSEE207 pKa = 4.29RR208 pKa = 11.84AILRR212 pKa = 11.84VTQTFYY218 pKa = 10.99PDD220 pKa = 4.09DD221 pKa = 4.31RR222 pKa = 11.84PQKK225 pKa = 10.03HH226 pKa = 6.33LLYY229 pKa = 10.46LASQGGKK236 pKa = 6.3TVHH239 pKa = 5.93YY240 pKa = 9.7SEE242 pKa = 5.31VSATVTPLPGGNASFNVTIEE262 pKa = 4.26FTDD265 pKa = 3.63QPDD268 pKa = 3.48DD269 pKa = 3.76TTIHH273 pKa = 6.25LWVSPKK279 pKa = 10.6GINDD283 pKa = 3.81DD284 pKa = 3.77PDD286 pKa = 3.73AVSAYY291 pKa = 10.5YY292 pKa = 9.98ILNSLSSYY300 pKa = 10.27DD301 pKa = 3.7DD302 pKa = 4.34PYY304 pKa = 11.04AHH306 pKa = 7.22EE307 pKa = 5.43EE308 pKa = 3.97ISCDD312 pKa = 3.18SVYY315 pKa = 11.19QNIVMVLGSVVNITSPDD332 pKa = 3.88PLPRR336 pKa = 11.84APDD339 pKa = 3.38YY340 pKa = 11.14SYY342 pKa = 8.83PTDD345 pKa = 4.01DD346 pKa = 4.17PAGEE350 pKa = 4.33TTEE353 pKa = 5.03SAVTWLEE360 pKa = 3.83ATAQTADD367 pKa = 3.53EE368 pKa = 4.52ATTPLAAHH376 pKa = 6.28ATDD379 pKa = 4.67GYY381 pKa = 11.16EE382 pKa = 4.05PTTAAATLSTTEE394 pKa = 5.34DD395 pKa = 3.35LTQEE399 pKa = 4.1TSTPTVTTVIDD410 pKa = 3.85PTSGAVTTEE419 pKa = 3.52SRR421 pKa = 11.84TTEE424 pKa = 3.65GTAANVATTEE434 pKa = 3.94AAGTEE439 pKa = 4.34GQNQEE444 pKa = 3.77ATTAGGPTNAATTLGHH460 pKa = 5.1QTIEE464 pKa = 3.96AATVEE469 pKa = 4.52DD470 pKa = 3.99STTTARR476 pKa = 11.84AAEE479 pKa = 4.57YY480 pKa = 7.18PTPTTTTVEE489 pKa = 3.96PRR491 pKa = 11.84PAGGTTIEE499 pKa = 5.25DD500 pKa = 4.01PTDD503 pKa = 3.42SPAIEE508 pKa = 4.73DD509 pKa = 3.88TTTPTTTAAKK519 pKa = 8.82VTALKK524 pKa = 9.03TAAAEE529 pKa = 4.57GPTPCVTTYY538 pKa = 10.04TGSDD542 pKa = 3.19TEE544 pKa = 4.4AAQSATSISDD554 pKa = 3.11AVTPEE559 pKa = 4.15DD560 pKa = 4.11LTPEE564 pKa = 4.05TTTPVDD570 pKa = 3.12WSVTSTYY577 pKa = 10.7ISVADD582 pKa = 4.24GTSMPAPTPSAVAHH596 pKa = 6.01EE597 pKa = 4.99ASTTPAPTATAVPTSHH613 pKa = 6.41TPKK616 pKa = 9.38PQEE619 pKa = 4.15STSTPSRR626 pKa = 11.84APTTGVAPVTANSLSPAATSSEE648 pKa = 4.09RR649 pKa = 11.84IVILNTATASSGPGASTGATTAPISPPWSASPAGDD684 pKa = 3.34GVTTSAARR692 pKa = 11.84TLEE695 pKa = 4.05PSSTRR700 pKa = 11.84KK701 pKa = 9.66AVAAEE706 pKa = 4.13STTAADD712 pKa = 4.41DD713 pKa = 3.8VATSEE718 pKa = 4.92LGSGDD723 pKa = 4.02YY724 pKa = 10.71GDD726 pKa = 5.1HH727 pKa = 5.77ATEE730 pKa = 4.32PPRR733 pKa = 11.84IVITNPPGITTLHH746 pKa = 6.78DD747 pKa = 3.78ADD749 pKa = 4.81AAEE752 pKa = 4.43EE753 pKa = 4.63DD754 pKa = 3.81PWPTRR759 pKa = 11.84PLYY762 pKa = 10.67SVNIVNATLTANGMLTATCMAAAKK786 pKa = 9.38AKK788 pKa = 10.28HH789 pKa = 6.34AITFTWHH796 pKa = 5.63VGSNMVPAITGPPEE810 pKa = 4.42PGLMFNGNRR819 pKa = 11.84AWSSRR824 pKa = 11.84LQTVEE829 pKa = 3.96YY830 pKa = 9.92GISPSARR837 pKa = 11.84LACMACTVPPAQRR850 pKa = 11.84YY851 pKa = 6.88CAHH854 pKa = 7.07DD855 pKa = 3.55VAVVARR861 pKa = 11.84HH862 pKa = 6.44DD863 pKa = 3.85RR864 pKa = 11.84LEE866 pKa = 5.66LDD868 pKa = 3.51MQVDD872 pKa = 4.12VATVSVVCSGLDD884 pKa = 3.53GVEE887 pKa = 4.05SEE889 pKa = 5.42PYY891 pKa = 10.11FVWTANGRR899 pKa = 11.84PVPLGSVRR907 pKa = 11.84TKK909 pKa = 10.65RR910 pKa = 11.84IPNDD914 pKa = 3.17YY915 pKa = 7.85GTPARR920 pKa = 11.84WQSAIHH926 pKa = 6.45ISRR929 pKa = 11.84FFVPAGHH936 pKa = 6.76RR937 pKa = 11.84DD938 pKa = 3.6VYY940 pKa = 11.22EE941 pKa = 4.26CTATLASGEE950 pKa = 4.38TIKK953 pKa = 10.26ATKK956 pKa = 9.46NWSNTDD962 pKa = 3.37YY963 pKa = 11.46LALQKK968 pKa = 10.62NAAARR973 pKa = 11.84STFVVAGGITAFAVAEE989 pKa = 4.12LLL991 pKa = 4.14

Molecular weight: 104.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q6UDK9|KITH_PSHV1 Thymidine kinase OS=Psittacid herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997) OX=670426 GN=TK PE=3 SV=1
MM1 pKa = 7.39PRR3 pKa = 11.84RR4 pKa = 11.84RR5 pKa = 11.84RR6 pKa = 11.84GPRR9 pKa = 11.84CDD11 pKa = 3.54PSSALAVDD19 pKa = 3.95VAAAVAAATSRR30 pKa = 11.84TRR32 pKa = 11.84AQKK35 pKa = 9.49VRR37 pKa = 11.84KK38 pKa = 8.76AKK40 pKa = 10.25KK41 pKa = 8.15VLAANGHH48 pKa = 5.21KK49 pKa = 8.31WHH51 pKa = 6.99RR52 pKa = 11.84RR53 pKa = 11.84AKK55 pKa = 8.93TPVNKK60 pKa = 8.94RR61 pKa = 11.84TLVAARR67 pKa = 11.84LLAGVRR73 pKa = 11.84CHH75 pKa = 5.73NRR77 pKa = 11.84FYY79 pKa = 11.26GALVSSFEE87 pKa = 3.96TAYY90 pKa = 11.04CMNHH94 pKa = 4.89RR95 pKa = 11.84HH96 pKa = 5.85GSDD99 pKa = 2.98GLAATIIAEE108 pKa = 4.19ACGAVPVCSLNTTIMFEE125 pKa = 4.22VNLGGRR131 pKa = 11.84RR132 pKa = 11.84PDD134 pKa = 4.31CICVLDD140 pKa = 3.85RR141 pKa = 11.84AGVAGAPRR149 pKa = 11.84EE150 pKa = 4.36SVCLIVEE157 pKa = 4.72LKK159 pKa = 8.72TCRR162 pKa = 11.84FSRR165 pKa = 11.84SALTEE170 pKa = 4.14SKK172 pKa = 10.4KK173 pKa = 10.38NQYY176 pKa = 8.5ATGLRR181 pKa = 11.84QLRR184 pKa = 11.84DD185 pKa = 3.36SAKK188 pKa = 9.91IICDD192 pKa = 3.45VAVPGADD199 pKa = 3.05FVHH202 pKa = 6.57IVPVLVFVAQRR213 pKa = 11.84SMRR216 pKa = 11.84IMDD219 pKa = 3.03VRR221 pKa = 11.84KK222 pKa = 8.99FNEE225 pKa = 3.8RR226 pKa = 11.84VVRR229 pKa = 11.84ANAEE233 pKa = 4.18LLRR236 pKa = 11.84LRR238 pKa = 11.84LAALGVYY245 pKa = 9.63SRR247 pKa = 11.84SFAAAPQRR255 pKa = 11.84LQSAQDD261 pKa = 3.2RR262 pKa = 11.84CHH264 pKa = 6.78DD265 pKa = 3.68HH266 pKa = 7.13AATPKK271 pKa = 8.0PTPAVVPSPPAPPNPAPPQSRR292 pKa = 11.84VGFGSALAMATAVMLGEE309 pKa = 4.21YY310 pKa = 10.27ARR312 pKa = 11.84EE313 pKa = 4.06NKK315 pKa = 9.73PPRR318 pKa = 4.13

Molecular weight: 34.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

71

1

72

40367

47

3195

560.7

61.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.906 ± 0.355

2.049 ± 0.126

5.757 ± 0.23

5.854 ± 0.238

3.651 ± 0.169

6.934 ± 0.178

2.059 ± 0.074

3.647 ± 0.137

3.518 ± 0.209

9.084 ± 0.221

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.356 ± 0.121

2.918 ± 0.129

5.965 ± 0.297

2.75 ± 0.13

7.62 ± 0.252

7.578 ± 0.235

5.638 ± 0.291

6.76 ± 0.208

1.147 ± 0.051

2.809 ± 0.132
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski