Planktothrix phage PaV-LD

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 142 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G9BWC2|G9BWC2_9CAUD Uncharacterized protein OS=Planktothrix phage PaV-LD OX=994601 GN=PaVLD_ORF019R PE=4 SV=1
MM1 pKa = 8.17LEE3 pKa = 3.85IYY5 pKa = 10.19EE6 pKa = 4.17YY7 pKa = 10.6DD8 pKa = 3.2QSNIDD13 pKa = 3.82EE14 pKa = 4.66SWFDD18 pKa = 3.31WSGGLWWPDD27 pKa = 3.19FEE29 pKa = 4.35EE30 pKa = 5.92AGIEE34 pKa = 4.08KK35 pKa = 10.61CFVAWKK41 pKa = 9.82GEE43 pKa = 4.13EE44 pKa = 4.0VVGFQTVNGSYY55 pKa = 10.93DD56 pKa = 3.48CVAIEE61 pKa = 5.37AKK63 pKa = 10.63YY64 pKa = 9.75QGQGIGRR71 pKa = 11.84ALVEE75 pKa = 3.59QSGCYY80 pKa = 9.74RR81 pKa = 11.84PDD83 pKa = 3.28RR84 pKa = 11.84NEE86 pKa = 4.4CPEE89 pKa = 4.22FWAKK93 pKa = 8.99MAEE96 pKa = 4.22EE97 pKa = 4.46FGNN100 pKa = 3.64

Molecular weight: 11.54 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G9BWG5|G9BWG5_9CAUD Uncharacterized protein OS=Planktothrix phage PaV-LD OX=994601 GN=PaVLD_ORF062R PE=4 SV=1
MM1 pKa = 7.34TFILYY6 pKa = 9.28RR7 pKa = 11.84QKK9 pKa = 11.21SRR11 pKa = 11.84FNAPPTEE18 pKa = 4.09IQAKK22 pKa = 9.55LAIAQAHH29 pKa = 5.75LNIGRR34 pKa = 11.84SKK36 pKa = 11.3LNN38 pKa = 3.3

Molecular weight: 4.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

142

0

142

28419

35

1584

200.1

22.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.83 ± 0.232

0.968 ± 0.077

5.722 ± 0.193

7.252 ± 0.221

3.709 ± 0.153

6.643 ± 0.187

1.358 ± 0.11

6.7 ± 0.192

7.625 ± 0.407

8.459 ± 0.286

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.041 ± 0.103

4.954 ± 0.125

4.465 ± 0.187

4.441 ± 0.219

4.757 ± 0.153

7.203 ± 0.168

5.94 ± 0.222

6.133 ± 0.145

1.552 ± 0.117

3.248 ± 0.176
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski