Stenotrophomonas maltophilia (strain K279a)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group; Stenotrophomonas maltophilia

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4365 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B2FSK9|B2FSK9_STRMK Putative ABC transporter ATP-binding protein OS=Stenotrophomonas maltophilia (strain K279a) OX=522373 GN=Smlt1185 PE=4 SV=1
MM1 pKa = 7.14NLVDD5 pKa = 4.97RR6 pKa = 11.84FLSGLIPRR14 pKa = 11.84LPADD18 pKa = 5.3DD19 pKa = 4.44APQWAHH25 pKa = 4.92VQGASAEE32 pKa = 4.03DD33 pKa = 3.74LQRR36 pKa = 11.84LRR38 pKa = 11.84MQWPQVPDD46 pKa = 3.56SLVEE50 pKa = 3.79LLSRR54 pKa = 11.84VDD56 pKa = 3.29GTHH59 pKa = 5.14FRR61 pKa = 11.84EE62 pKa = 4.32YY63 pKa = 10.02PGGGVCVLMLGSDD76 pKa = 4.07VEE78 pKa = 4.68DD79 pKa = 3.68GGYY82 pKa = 9.77PYY84 pKa = 10.97YY85 pKa = 10.55LRR87 pKa = 11.84SVAQIFEE94 pKa = 4.72DD95 pKa = 3.61QQQWDD100 pKa = 3.52DD101 pKa = 4.29SIRR104 pKa = 11.84SIYY107 pKa = 9.47EE108 pKa = 3.32EE109 pKa = 4.08WLDD112 pKa = 4.85DD113 pKa = 3.82EE114 pKa = 5.18PEE116 pKa = 4.01ILGEE120 pKa = 5.11GIDD123 pKa = 5.01ADD125 pKa = 3.93LPMNRR130 pKa = 11.84RR131 pKa = 11.84LCFSHH136 pKa = 6.69CMNNGGTSMLYY147 pKa = 10.57LDD149 pKa = 5.5FNPAPGGTVGQVVRR163 pKa = 11.84YY164 pKa = 9.01LHH166 pKa = 7.24DD167 pKa = 5.09PDD169 pKa = 4.6SYY171 pKa = 12.0AVIAPSFDD179 pKa = 4.49AYY181 pKa = 10.67LQQLIDD187 pKa = 3.61GGYY190 pKa = 10.42AFIDD194 pKa = 3.85EE195 pKa = 4.52EE196 pKa = 4.34QQ197 pKa = 3.2

Molecular weight: 22.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|B2FN90|IF2_STRMK Translation initiation factor IF-2 OS=Stenotrophomonas maltophilia (strain K279a) OX=522373 GN=infB PE=3 SV=1
MM1 pKa = 7.64WPRR4 pKa = 11.84AFAGTVAGFLLAAAATGLLAWVPPGPWQRR33 pKa = 11.84ALVPTLIAFIPLWMLAALWAFSFRR57 pKa = 11.84SALRR61 pKa = 11.84AWLVLGGSAAAGFAMLGLLRR81 pKa = 11.84LTGAVQQ87 pKa = 3.12

Molecular weight: 9.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4365

0

4365

1427787

38

4127

327.1

35.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.875 ± 0.054

0.823 ± 0.013

5.675 ± 0.031

5.065 ± 0.036

3.268 ± 0.027

8.626 ± 0.062

2.245 ± 0.021

4.015 ± 0.028

2.686 ± 0.032

11.034 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.203 ± 0.018

2.638 ± 0.037

5.335 ± 0.038

4.407 ± 0.029

7.475 ± 0.042

5.434 ± 0.03

4.923 ± 0.039

7.371 ± 0.033

1.609 ± 0.018

2.294 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski