Porcine stool-associated circular virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; unclassified Porprismacovirus

Average proteome isoelectric point is 6.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A341ZMI4|A0A341ZMI4_9VIRU Putative capsid protein OS=Porcine stool-associated circular virus OX=1843773 PE=4 SV=1
MM1 pKa = 6.78ATNYY5 pKa = 9.85VKK7 pKa = 10.65ARR9 pKa = 11.84YY10 pKa = 8.8QEE12 pKa = 4.35IYY14 pKa = 11.04DD15 pKa = 4.09FGTQAGKK22 pKa = 6.91TTILGVHH29 pKa = 6.28SPTGNKK35 pKa = 7.74VQEE38 pKa = 4.04MLGGFFRR45 pKa = 11.84QFRR48 pKa = 11.84KK49 pKa = 10.1YY50 pKa = 9.85RR51 pKa = 11.84YY52 pKa = 8.73SGCTVTMVPAAQLPADD68 pKa = 4.06PLQVSFEE75 pKa = 4.22AGALTIDD82 pKa = 4.33PRR84 pKa = 11.84DD85 pKa = 3.65MLNPILFHH93 pKa = 6.25GAHH96 pKa = 6.16GEE98 pKa = 4.24SLNEE102 pKa = 3.91ALNLIYY108 pKa = 9.83NTSTAEE114 pKa = 4.15MVDD117 pKa = 3.45GASVKK122 pKa = 10.16EE123 pKa = 3.93IRR125 pKa = 11.84DD126 pKa = 3.51QFSISSWGSEE136 pKa = 3.56NAYY139 pKa = 10.65YY140 pKa = 10.51SALCDD145 pKa = 3.51PSFKK149 pKa = 10.82KK150 pKa = 10.77FGIQSGAKK158 pKa = 8.81VNLRR162 pKa = 11.84PMVHH166 pKa = 6.0PVVLNHH172 pKa = 6.9AMLPSDD178 pKa = 4.84SGVEE182 pKa = 3.71YY183 pKa = 11.03DD184 pKa = 4.06NASNHH189 pKa = 6.03YY190 pKa = 10.91DD191 pKa = 3.35MASDD195 pKa = 4.12GVGQILGDD203 pKa = 3.58NRR205 pKa = 11.84IGQGAIGNIAEE216 pKa = 4.23VSGAEE221 pKa = 4.01AVSVVPRR228 pKa = 11.84QMFTSGLRR236 pKa = 11.84PLGWLNTTQFAAPINVPNGSTNIDD260 pKa = 3.0WFLSYY265 pKa = 10.97SYY267 pKa = 10.28IPKK270 pKa = 10.1IMMGVFILPPSYY282 pKa = 9.11TQEE285 pKa = 3.69MYY287 pKa = 10.42FRR289 pKa = 11.84LIINHH294 pKa = 5.37YY295 pKa = 10.77FEE297 pKa = 5.98FKK299 pKa = 10.75DD300 pKa = 4.02FSTALTYY307 pKa = 11.03SPDD310 pKa = 3.54GARR313 pKa = 11.84LVYY316 pKa = 10.36TEE318 pKa = 5.24TIPDD322 pKa = 3.85PSGGASLSSASLDD335 pKa = 3.67VEE337 pKa = 4.18NGTIAKK343 pKa = 6.66TTDD346 pKa = 2.97GVFF349 pKa = 3.16

Molecular weight: 38.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A341ZMI4|A0A341ZMI4_9VIRU Putative capsid protein OS=Porcine stool-associated circular virus OX=1843773 PE=4 SV=1
MM1 pKa = 6.24QTYY4 pKa = 9.74MMTIPRR10 pKa = 11.84TVSKK14 pKa = 10.35RR15 pKa = 11.84ALRR18 pKa = 11.84IMIEE22 pKa = 4.22KK23 pKa = 10.03NDD25 pKa = 3.84CKK27 pKa = 10.6KK28 pKa = 8.7WTIGKK33 pKa = 9.42EE34 pKa = 3.81KK35 pKa = 10.49GKK37 pKa = 10.28NGYY40 pKa = 7.38EE41 pKa = 3.45HH42 pKa = 5.57WQIRR46 pKa = 11.84IEE48 pKa = 4.1TSNDD52 pKa = 3.27DD53 pKa = 3.58FFEE56 pKa = 3.99WMQDD60 pKa = 3.68HH61 pKa = 7.09IPTAHH66 pKa = 6.76IEE68 pKa = 4.17KK69 pKa = 10.0SDD71 pKa = 3.77SGVDD75 pKa = 3.14EE76 pKa = 4.55CRR78 pKa = 11.84YY79 pKa = 6.09EE80 pKa = 4.29TKK82 pKa = 10.18EE83 pKa = 4.03GQYY86 pKa = 8.7VTYY89 pKa = 10.42SDD91 pKa = 4.24RR92 pKa = 11.84VQNLMQRR99 pKa = 11.84YY100 pKa = 8.21GAFRR104 pKa = 11.84PNQKK108 pKa = 9.94RR109 pKa = 11.84AMQALEE115 pKa = 4.08ATNDD119 pKa = 3.53RR120 pKa = 11.84QVVVWYY126 pKa = 10.21DD127 pKa = 3.2EE128 pKa = 4.14TGNVGKK134 pKa = 10.24SWFTGALWEE143 pKa = 4.56RR144 pKa = 11.84GLAYY148 pKa = 7.93VTPPTIDD155 pKa = 3.16TVKK158 pKa = 11.09GLIQWVASCYY168 pKa = 9.78IDD170 pKa = 4.44GGWRR174 pKa = 11.84PYY176 pKa = 11.0VIIDD180 pKa = 4.19VPRR183 pKa = 11.84SWKK186 pKa = 9.71WSEE189 pKa = 3.8QLYY192 pKa = 10.74SAIEE196 pKa = 4.22SIKK199 pKa = 11.0DD200 pKa = 3.09GLIYY204 pKa = 9.1DD205 pKa = 4.01TRR207 pKa = 11.84YY208 pKa = 8.56HH209 pKa = 6.86SRR211 pKa = 11.84MINIRR216 pKa = 11.84GVKK219 pKa = 9.03VLVMTNTMPKK229 pKa = 9.86LDD231 pKa = 4.6KK232 pKa = 10.62LSKK235 pKa = 10.6DD236 pKa = 3.0RR237 pKa = 11.84WCICTFF243 pKa = 3.64

Molecular weight: 28.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

592

243

349

296.0

33.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.588 ± 1.58

1.182 ± 0.559

5.743 ± 0.538

4.899 ± 0.551

3.885 ± 1.168

7.77 ± 1.021

1.858 ± 0.136

6.757 ± 0.679

4.899 ± 1.603

6.081 ± 0.993

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.716 ± 0.255

4.73 ± 0.656

4.73 ± 0.919

4.054 ± 0.302

4.899 ± 1.34

7.432 ± 1.331

6.757 ± 0.416

6.588 ± 0.002

2.365 ± 1.382

5.068 ± 0.18
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski