Vibrio phage vB_VmeM-Yong XC31

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae

Average proteome isoelectric point is 5.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 318 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6B7EYL4|A0A6B7EYL4_9CAUD Uncharacterized protein OS=Vibrio phage vB_VmeM-Yong XC31 OX=2500766 PE=4 SV=1
MM1 pKa = 7.77SIQITEE7 pKa = 4.46PVNSTPVTDD16 pKa = 6.02LMKK19 pKa = 10.37GWCKK23 pKa = 10.18GLEE26 pKa = 3.94VHH28 pKa = 6.71VPQSLPGFSLDD39 pKa = 3.38VVPYY43 pKa = 10.52SDD45 pKa = 4.42YY46 pKa = 11.53FEE48 pKa = 6.69DD49 pKa = 6.31DD50 pKa = 3.48EE51 pKa = 7.25DD52 pKa = 4.09EE53 pKa = 4.47DD54 pKa = 4.05

Molecular weight: 6.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6B7EWF3|A0A6B7EWF3_9CAUD Uncharacterized protein OS=Vibrio phage vB_VmeM-Yong XC31 OX=2500766 PE=4 SV=1
MM1 pKa = 6.8KK2 pKa = 10.01TKK4 pKa = 10.25IVQADD9 pKa = 3.37STGPMEE15 pKa = 5.7EE16 pKa = 4.32VFQPTAAYY24 pKa = 10.02GPGDD28 pKa = 3.96LVYY31 pKa = 10.83KK32 pKa = 10.42DD33 pKa = 3.29GQYY36 pKa = 10.81YY37 pKa = 9.34RR38 pKa = 11.84VVEE41 pKa = 4.42PYY43 pKa = 9.73LKK45 pKa = 10.5KK46 pKa = 10.22IAGEE50 pKa = 4.06RR51 pKa = 11.84KK52 pKa = 9.06RR53 pKa = 11.84DD54 pKa = 3.5RR55 pKa = 11.84LTKK58 pKa = 9.61PKK60 pKa = 10.44RR61 pKa = 11.84RR62 pKa = 11.84VAKK65 pKa = 10.24IKK67 pKa = 10.5ASRR70 pKa = 11.84KK71 pKa = 9.14AKK73 pKa = 9.59RR74 pKa = 11.84QSRR77 pKa = 11.84RR78 pKa = 11.84NNRR81 pKa = 11.84RR82 pKa = 2.92

Molecular weight: 9.58 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

318

0

318

89916

39

1901

282.8

31.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.795 ± 0.165

1.045 ± 0.051

6.347 ± 0.085

7.52 ± 0.144

4.36 ± 0.079

6.444 ± 0.148

2.238 ± 0.066

5.601 ± 0.086

5.944 ± 0.136

8.57 ± 0.12

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.686 ± 0.068

4.591 ± 0.084

3.904 ± 0.078

3.288 ± 0.067

5.198 ± 0.093

6.208 ± 0.096

6.132 ± 0.108

6.888 ± 0.106

1.458 ± 0.061

3.784 ± 0.075
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski