Kandleria vitulina DSM 20405

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Kandleria; Kandleria vitulina

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2043 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R2HEP7|A0A0R2HEP7_9FIRM Aminopyrimidine aminohydrolase OS=Kandleria vitulina DSM 20405 OX=1410657 GN=IV49_GL000140 PE=3 SV=1
MM1 pKa = 7.99KK2 pKa = 10.14DD3 pKa = 3.24NKK5 pKa = 9.22ITVYY9 pKa = 10.51DD10 pKa = 3.39QSGEE14 pKa = 4.07KK15 pKa = 10.22KK16 pKa = 10.05EE17 pKa = 4.03FEE19 pKa = 4.15ILFTYY24 pKa = 10.68DD25 pKa = 4.77DD26 pKa = 4.58EE27 pKa = 6.94DD28 pKa = 4.3SSSHH32 pKa = 4.49YY33 pKa = 10.6VFYY36 pKa = 11.03YY37 pKa = 10.71DD38 pKa = 5.25EE39 pKa = 4.6NDD41 pKa = 3.39EE42 pKa = 4.26EE43 pKa = 4.55QVFVSKK49 pKa = 10.95YY50 pKa = 10.14DD51 pKa = 3.89EE52 pKa = 4.68EE53 pKa = 4.53GHH55 pKa = 7.07LYY57 pKa = 9.98PIEE60 pKa = 5.36DD61 pKa = 3.61PKK63 pKa = 11.31EE64 pKa = 3.7WDD66 pKa = 3.26KK67 pKa = 11.71TEE69 pKa = 4.9EE70 pKa = 4.06ILDD73 pKa = 3.86SYY75 pKa = 10.45LANDD79 pKa = 3.65AVDD82 pKa = 4.55GEE84 pKa = 4.87SCGGEE89 pKa = 3.96DD90 pKa = 5.26CEE92 pKa = 5.05

Molecular weight: 10.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R2HDQ6|A0A0R2HDQ6_9FIRM PfkB domain-containing protein OS=Kandleria vitulina DSM 20405 OX=1410657 GN=IV49_GL001781 PE=4 SV=1
MM1 pKa = 7.13NMKK4 pKa = 9.17RR5 pKa = 11.84TYY7 pKa = 10.32QPNKK11 pKa = 8.62RR12 pKa = 11.84KK13 pKa = 9.56RR14 pKa = 11.84AKK16 pKa = 8.76THH18 pKa = 5.23GFRR21 pKa = 11.84ARR23 pKa = 11.84MATVGGRR30 pKa = 11.84KK31 pKa = 9.34VIARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 8.99KK39 pKa = 10.04GRR41 pKa = 11.84KK42 pKa = 8.66VLSAA46 pKa = 4.05

Molecular weight: 5.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2043

0

2043

621057

37

2775

304.0

34.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.258 ± 0.06

1.219 ± 0.02

6.119 ± 0.048

7.048 ± 0.069

4.303 ± 0.046

6.193 ± 0.057

2.431 ± 0.031

8.179 ± 0.054

8.232 ± 0.061

9.09 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.096 ± 0.023

4.978 ± 0.051

2.85 ± 0.028

2.823 ± 0.023

3.794 ± 0.042

6.06 ± 0.045

5.222 ± 0.044

6.697 ± 0.04

0.693 ± 0.019

4.66 ± 0.048
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski