Circovirus-like genome DCCV-10

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; unclassified Circoviridae

Average proteome isoelectric point is 7.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A190WHE1|A0A190WHE1_9CIRC ATP-dependent helicase Rep OS=Circovirus-like genome DCCV-10 OX=1788438 PE=3 SV=1
MM1 pKa = 6.46TTRR4 pKa = 11.84IRR6 pKa = 11.84AWCFTLNNPTDD17 pKa = 3.66RR18 pKa = 11.84DD19 pKa = 3.54KK20 pKa = 11.43RR21 pKa = 11.84ALIALANTTRR31 pKa = 11.84YY32 pKa = 10.22VIAQLEE38 pKa = 4.3HH39 pKa = 6.95APTTGTPHH47 pKa = 5.39YY48 pKa = 8.8QGYY51 pKa = 7.88MVFHH55 pKa = 7.6DD56 pKa = 4.58GKK58 pKa = 11.0SFSALHH64 pKa = 6.09KK65 pKa = 10.59AMPRR69 pKa = 11.84AHH71 pKa = 6.94FEE73 pKa = 3.97PARR76 pKa = 11.84GTAQQNYY83 pKa = 9.89DD84 pKa = 4.04YY85 pKa = 9.02CTKK88 pKa = 10.63AADD91 pKa = 3.61EE92 pKa = 4.55GQPSNEE98 pKa = 3.81LVLEE102 pKa = 4.64HH103 pKa = 6.49GTLPQQGEE111 pKa = 4.36RR112 pKa = 11.84VDD114 pKa = 3.37ISQVRR119 pKa = 11.84EE120 pKa = 3.89LLRR123 pKa = 11.84SGVTYY128 pKa = 10.79RR129 pKa = 11.84EE130 pKa = 4.09LVDD133 pKa = 3.36MDD135 pKa = 3.9VNYY138 pKa = 10.35QVLRR142 pKa = 11.84IAQEE146 pKa = 3.74WLRR149 pKa = 11.84VHH151 pKa = 6.84EE152 pKa = 4.48PARR155 pKa = 11.84DD156 pKa = 3.85FKK158 pKa = 11.56PEE160 pKa = 3.69VRR162 pKa = 11.84WFYY165 pKa = 11.44GEE167 pKa = 4.04PGAGKK172 pKa = 8.06TRR174 pKa = 11.84AALEE178 pKa = 3.93WLEE181 pKa = 3.9SHH183 pKa = 6.66GEE185 pKa = 4.16VFTVEE190 pKa = 4.33TPAKK194 pKa = 9.98YY195 pKa = 8.51WDD197 pKa = 4.65GYY199 pKa = 10.94DD200 pKa = 3.29GHH202 pKa = 7.14NCVLFDD208 pKa = 5.79DD209 pKa = 5.51LRR211 pKa = 11.84ADD213 pKa = 3.09QCGFVRR219 pKa = 11.84MLRR222 pKa = 11.84LLDD225 pKa = 4.08RR226 pKa = 11.84YY227 pKa = 10.98AMRR230 pKa = 11.84VEE232 pKa = 4.22VKK234 pKa = 10.52GGSKK238 pKa = 8.18QLRR241 pKa = 11.84ARR243 pKa = 11.84YY244 pKa = 8.81IAITAPHH251 pKa = 6.83RR252 pKa = 11.84PEE254 pKa = 4.05EE255 pKa = 4.16IYY257 pKa = 9.43RR258 pKa = 11.84TSSEE262 pKa = 4.42NIVQLTRR269 pKa = 11.84RR270 pKa = 11.84ISSVTHH276 pKa = 4.73VTRR279 pKa = 11.84DD280 pKa = 3.48DD281 pKa = 4.17PDD283 pKa = 3.33NGRR286 pKa = 11.84PTCRR290 pKa = 11.84YY291 pKa = 9.17GNCEE295 pKa = 4.14PDD297 pKa = 3.11EE298 pKa = 4.24CLCRR302 pKa = 11.84SNDD305 pKa = 3.88GSDD308 pKa = 3.29EE309 pKa = 4.79LYY311 pKa = 10.95DD312 pKa = 4.07SEE314 pKa = 4.83

Molecular weight: 36.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A190WHC6|A0A190WHC6_9CIRC Uncharacterized protein OS=Circovirus-like genome DCCV-10 OX=1788438 PE=4 SV=1
MM1 pKa = 7.58LQRR4 pKa = 11.84QVHH7 pKa = 4.77RR8 pKa = 11.84TIKK11 pKa = 8.78VTWSSTTVSRR21 pKa = 11.84LVHH24 pKa = 5.23CTRR27 pKa = 11.84RR28 pKa = 11.84CQEE31 pKa = 4.93PISSLPGARR40 pKa = 11.84RR41 pKa = 11.84SKK43 pKa = 10.91IMIIAQRR50 pKa = 11.84LQTKK54 pKa = 9.9ASPPTSSYY62 pKa = 11.17SSTVPYY68 pKa = 9.74PSRR71 pKa = 11.84GRR73 pKa = 11.84GSIYY77 pKa = 9.58PRR79 pKa = 11.84CVSYY83 pKa = 10.64SAPGSHH89 pKa = 6.02IVNWLTWMSITRR101 pKa = 11.84SS102 pKa = 3.42

Molecular weight: 11.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

806

102

390

268.7

30.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.444 ± 0.533

1.613 ± 0.632

5.955 ± 0.845

4.218 ± 1.602

2.854 ± 0.465

5.583 ± 0.363

1.985 ± 0.89

4.094 ± 0.556

5.087 ± 1.382

7.32 ± 0.344

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.481 ± 0.27

3.846 ± 0.583

5.211 ± 0.405

4.467 ± 0.149

8.437 ± 1.136

8.065 ± 1.748

9.057 ± 1.024

7.072 ± 0.389

1.489 ± 0.27

3.722 ± 0.573
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski