Corchorus yellow vein virus - [Hoa Binh]

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Corchorus yellow vein virus

Average proteome isoelectric point is 8.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q645G8|Q645G8_9GEMI Nuclear shuttle protein OS=Corchorus yellow vein virus - [Hoa Binh] OX=293284 GN=BV1 PE=3 SV=1
MM1 pKa = 7.74EE2 pKa = 4.83SQLAQAPSSFNYY14 pKa = 9.76IEE16 pKa = 4.09SHH18 pKa = 6.17RR19 pKa = 11.84DD20 pKa = 3.25EE21 pKa = 4.44YY22 pKa = 11.48RR23 pKa = 11.84LTHH26 pKa = 7.07DD27 pKa = 3.36LTEE30 pKa = 4.44IVLQFPSTAEE40 pKa = 3.5QWGATVRR47 pKa = 11.84RR48 pKa = 11.84RR49 pKa = 11.84CMKK52 pKa = 9.72IDD54 pKa = 3.27HH55 pKa = 6.48CVIEE59 pKa = 4.31YY60 pKa = 9.79RR61 pKa = 11.84QQVPINATGSVIVEE75 pKa = 3.82IHH77 pKa = 7.1DD78 pKa = 4.31KK79 pKa = 11.26RR80 pKa = 11.84MTDD83 pKa = 3.41NEE85 pKa = 4.46SLQASYY91 pKa = 9.77TFPIRR96 pKa = 11.84CNIDD100 pKa = 2.86LHH102 pKa = 6.12YY103 pKa = 10.57FSASFFSLKK112 pKa = 10.83DD113 pKa = 3.77PIPWKK118 pKa = 10.22LYY120 pKa = 10.12YY121 pKa = 9.87RR122 pKa = 11.84VSDD125 pKa = 3.88TNVHH129 pKa = 5.9QGTHH133 pKa = 4.64FAKK136 pKa = 10.88FKK138 pKa = 11.0GKK140 pKa = 10.75LKK142 pKa = 10.36MSTAKK147 pKa = 10.51HH148 pKa = 5.34SVDD151 pKa = 3.66VIFRR155 pKa = 11.84SPTVKK160 pKa = 10.15ILSKK164 pKa = 10.78QFTGKK169 pKa = 10.37DD170 pKa = 2.79IDD172 pKa = 4.26FSHH175 pKa = 7.02VDD177 pKa = 3.27YY178 pKa = 11.46GKK180 pKa = 10.29VEE182 pKa = 4.18RR183 pKa = 11.84KK184 pKa = 9.14LVKK187 pKa = 10.4CEE189 pKa = 3.68SSSRR193 pKa = 11.84LGLHH197 pKa = 5.88SAIEE201 pKa = 4.02LRR203 pKa = 11.84PGEE206 pKa = 4.2SWATRR211 pKa = 11.84SCIGPDD217 pKa = 3.12TMEE220 pKa = 4.52TEE222 pKa = 4.46SEE224 pKa = 4.3VHH226 pKa = 5.96NRR228 pKa = 11.84NHH230 pKa = 7.86PYY232 pKa = 10.35RR233 pKa = 11.84EE234 pKa = 4.15LNRR237 pKa = 11.84LSTSMLDD244 pKa = 3.84PGDD247 pKa = 3.96SASMIGASRR256 pKa = 11.84AEE258 pKa = 4.24SNITLTRR265 pKa = 11.84AQLQEE270 pKa = 4.35LVSSTVEE277 pKa = 3.45HH278 pKa = 6.95CINRR282 pKa = 11.84NCTPHH287 pKa = 5.59QAKK290 pKa = 9.86PLL292 pKa = 3.84

Molecular weight: 33.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q645H3|Q645H3_9GEMI Capsid protein OS=Corchorus yellow vein virus - [Hoa Binh] OX=293284 GN=AV1 PE=3 SV=1
MM1 pKa = 7.98PKK3 pKa = 9.65RR4 pKa = 11.84DD5 pKa = 3.82APWRR9 pKa = 11.84LMAGTSKK16 pKa = 10.64VSRR19 pKa = 11.84SSNYY23 pKa = 9.02SPRR26 pKa = 11.84GGVSDD31 pKa = 3.63SGSYY35 pKa = 10.25LPRR38 pKa = 11.84RR39 pKa = 11.84FSRR42 pKa = 11.84ASLWANRR49 pKa = 11.84PMYY52 pKa = 9.88RR53 pKa = 11.84KK54 pKa = 8.83PRR56 pKa = 11.84IYY58 pKa = 9.41RR59 pKa = 11.84TYY61 pKa = 10.72RR62 pKa = 11.84SPDD65 pKa = 3.24VPKK68 pKa = 10.81GCEE71 pKa = 4.39GPCKK75 pKa = 10.23VQSFEE80 pKa = 3.84QRR82 pKa = 11.84HH83 pKa = 6.27DD84 pKa = 3.18IAHH87 pKa = 6.05TGKK90 pKa = 10.57VICLSDD96 pKa = 3.31VTRR99 pKa = 11.84GNGITHH105 pKa = 6.78RR106 pKa = 11.84VGKK109 pKa = 9.44RR110 pKa = 11.84FCVKK114 pKa = 9.92SVYY117 pKa = 10.16ILGKK121 pKa = 9.37IWMDD125 pKa = 3.32EE126 pKa = 4.0NIKK129 pKa = 10.42VKK131 pKa = 10.63NHH133 pKa = 5.61TNSVMFWLVRR143 pKa = 11.84DD144 pKa = 3.83RR145 pKa = 11.84RR146 pKa = 11.84PFGSPMDD153 pKa = 4.16FGQVFNMYY161 pKa = 10.66DD162 pKa = 3.86NEE164 pKa = 4.34PSTATVKK171 pKa = 10.81NDD173 pKa = 2.84LRR175 pKa = 11.84DD176 pKa = 3.6RR177 pKa = 11.84YY178 pKa = 10.31QVMHH182 pKa = 7.01RR183 pKa = 11.84FSAKK187 pKa = 8.35VTGGQYY193 pKa = 11.1ASNEE197 pKa = 3.84QALVRR202 pKa = 11.84RR203 pKa = 11.84FWKK206 pKa = 10.4VNNHH210 pKa = 4.48VVYY213 pKa = 10.66NHH215 pKa = 5.84QEE217 pKa = 3.45AAKK220 pKa = 10.4YY221 pKa = 9.25EE222 pKa = 4.13NHH224 pKa = 6.46TEE226 pKa = 3.99NALLLYY232 pKa = 7.29MACTHH237 pKa = 7.07ASNPVYY243 pKa = 9.86ATLKK247 pKa = 9.47IRR249 pKa = 11.84IYY251 pKa = 10.59FYY253 pKa = 11.32DD254 pKa = 4.06SISNN258 pKa = 3.66

Molecular weight: 29.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1529

96

359

218.4

25.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.494 ± 0.305

2.224 ± 0.151

4.709 ± 0.238

4.709 ± 0.591

4.513 ± 0.418

4.578 ± 0.484

3.597 ± 0.477

5.821 ± 0.681

5.298 ± 0.563

6.475 ± 0.373

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.42 ± 0.466

5.755 ± 0.746

5.69 ± 0.421

3.728 ± 0.43

7.848 ± 1.046

9.614 ± 0.546

6.148 ± 0.423

5.559 ± 0.556

1.439 ± 0.273

4.382 ± 0.546
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski