Gammapapillomavirus 7

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Gammapapillomavirus

Average proteome isoelectric point is 6.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2ALC5|A0A2D2ALC5_9PAPI Regulatory protein E2 OS=Gammapapillomavirus 7 OX=1175849 GN=E2 PE=3 SV=1
MM1 pKa = 8.1DD2 pKa = 3.86SEE4 pKa = 4.64RR5 pKa = 11.84PRR7 pKa = 11.84KK8 pKa = 8.02RR9 pKa = 11.84TKK11 pKa = 10.15RR12 pKa = 11.84DD13 pKa = 3.08SVTNLYY19 pKa = 7.64RR20 pKa = 11.84TCQISGNCPEE30 pKa = 4.16DD31 pKa = 3.32VKK33 pKa = 11.62NKK35 pKa = 10.04VEE37 pKa = 4.34ANTLADD43 pKa = 3.34KK44 pKa = 10.86LLRR47 pKa = 11.84ILSSIVYY54 pKa = 9.96FGGLGIGTGKK64 pKa = 8.78GTGGSTGYY72 pKa = 10.49RR73 pKa = 11.84PISSGGGGGGRR84 pKa = 11.84VTGDD88 pKa = 3.05GTVIRR93 pKa = 11.84PNIVVEE99 pKa = 4.07PVGPSDD105 pKa = 5.19VIPIDD110 pKa = 3.61ALSPGSSSIVPLQEE124 pKa = 3.95AGAEE128 pKa = 4.07IIIPDD133 pKa = 3.52ISTDD137 pKa = 3.39LGAGEE142 pKa = 5.07LEE144 pKa = 4.97VITEE148 pKa = 4.14PDD150 pKa = 3.51IIDD153 pKa = 3.05ISGPQEE159 pKa = 4.21SPTVTTSEE167 pKa = 4.87DD168 pKa = 2.89IAIIDD173 pKa = 3.97VQPGPSTPRR182 pKa = 11.84RR183 pKa = 11.84VVTSSSRR190 pKa = 11.84FSNPSFISVVTSSSTTEE207 pKa = 3.99AGSTAIDD214 pKa = 3.87VFVHH218 pKa = 6.25GAAGGDD224 pKa = 3.56IIGEE228 pKa = 4.38EE229 pKa = 4.06IPLDD233 pKa = 3.58TFNEE237 pKa = 4.12PEE239 pKa = 3.97EE240 pKa = 4.42FEE242 pKa = 5.27IEE244 pKa = 5.33DD245 pKa = 3.54IPQPRR250 pKa = 11.84SSTPRR255 pKa = 11.84AFQRR259 pKa = 11.84AFSRR263 pKa = 11.84ARR265 pKa = 11.84DD266 pKa = 3.56LYY268 pKa = 9.85NRR270 pKa = 11.84RR271 pKa = 11.84VRR273 pKa = 11.84QVMTQNINFLTRR285 pKa = 11.84APQAVQFAFEE295 pKa = 4.96NPAFDD300 pKa = 3.77NDD302 pKa = 3.21ITIEE306 pKa = 4.05FQQDD310 pKa = 3.35LNQLAAAAPDD320 pKa = 4.13PDD322 pKa = 3.6FADD325 pKa = 3.05IVRR328 pKa = 11.84LHH330 pKa = 6.86RR331 pKa = 11.84PRR333 pKa = 11.84FSEE336 pKa = 3.96TAEE339 pKa = 3.84GQIRR343 pKa = 11.84VSRR346 pKa = 11.84LGTKK350 pKa = 8.53GTIRR354 pKa = 11.84LRR356 pKa = 11.84SGTQIGEE363 pKa = 4.49TVHH366 pKa = 7.0FYY368 pKa = 11.54YY369 pKa = 10.63DD370 pKa = 3.62LSSIEE375 pKa = 4.0DD376 pKa = 3.42AEE378 pKa = 4.58AIEE381 pKa = 4.44LSVLGEE387 pKa = 4.03HH388 pKa = 6.72SGDD391 pKa = 3.1ATVINPQAEE400 pKa = 4.59STFVDD405 pKa = 4.38AEE407 pKa = 4.12NSDD410 pKa = 3.86APLLFPEE417 pKa = 5.06EE418 pKa = 4.34EE419 pKa = 4.16LLDD422 pKa = 5.32DD423 pKa = 4.48ISEE426 pKa = 4.58DD427 pKa = 3.66FSNSHH432 pKa = 6.94VILSSGGRR440 pKa = 11.84RR441 pKa = 11.84SVLSVPTLPPGVALKK456 pKa = 10.81VFIDD460 pKa = 4.05DD461 pKa = 3.45VGEE464 pKa = 4.1GLFVSHH470 pKa = 7.11PVSTDD475 pKa = 3.34SIPPGVIPISDD486 pKa = 3.86IQPSILIDD494 pKa = 3.59EE495 pKa = 4.96FSSDD499 pKa = 4.99DD500 pKa = 4.21FILHH504 pKa = 7.02PSHH507 pKa = 6.25IPKK510 pKa = 10.32RR511 pKa = 11.84KK512 pKa = 8.36RR513 pKa = 11.84KK514 pKa = 9.46RR515 pKa = 11.84VTSLL519 pKa = 2.88

Molecular weight: 55.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2ALC6|A0A2D2ALC6_9PAPI ^E4 (Fragment) OS=Gammapapillomavirus 7 OX=1175849 GN=^E4 PE=4 SV=1
MM1 pKa = 7.57EE2 pKa = 4.83SLAEE6 pKa = 4.43RR7 pKa = 11.84FDD9 pKa = 4.13ALQEE13 pKa = 4.18NQLTLYY19 pKa = 7.69EE20 pKa = 4.3TGSTNIEE27 pKa = 3.92DD28 pKa = 4.48QILYY32 pKa = 9.33WDD34 pKa = 4.05TVRR37 pKa = 11.84QEE39 pKa = 4.14YY40 pKa = 11.14VLFHH44 pKa = 5.95YY45 pKa = 10.3ARR47 pKa = 11.84QRR49 pKa = 11.84GLSHH53 pKa = 7.28IGLQPVPTLTVSEE66 pKa = 4.51QKK68 pKa = 10.75AKK70 pKa = 10.47QAILMVLQLKK80 pKa = 8.89SLKK83 pKa = 9.98QSQFGNEE90 pKa = 3.95PWTMQDD96 pKa = 2.44TSYY99 pKa = 11.41EE100 pKa = 4.2LFNTAPSNTFKK111 pKa = 10.85KK112 pKa = 10.15GAYY115 pKa = 8.18TVDD118 pKa = 3.05VYY120 pKa = 11.9YY121 pKa = 11.01DD122 pKa = 3.8GDD124 pKa = 3.6EE125 pKa = 4.67DD126 pKa = 5.07NYY128 pKa = 10.74FPYY131 pKa = 10.0TAWSYY136 pKa = 11.28IYY138 pKa = 9.86YY139 pKa = 10.45QNGDD143 pKa = 3.96NEE145 pKa = 4.16WHH147 pKa = 6.37KK148 pKa = 11.48VKK150 pKa = 10.95GDD152 pKa = 3.1IDD154 pKa = 4.34YY155 pKa = 11.13EE156 pKa = 4.35GLFYY160 pKa = 10.77KK161 pKa = 10.49SHH163 pKa = 7.33DD164 pKa = 3.84GEE166 pKa = 4.05KK167 pKa = 9.84VYY169 pKa = 11.25YY170 pKa = 8.49VTFYY174 pKa = 11.59DD175 pKa = 3.64DD176 pKa = 3.19ATRR179 pKa = 11.84FSRR182 pKa = 11.84TGKK185 pKa = 6.65WTVRR189 pKa = 11.84YY190 pKa = 9.85KK191 pKa = 10.16NTTISSTSITSTSGPTGNPTSKK213 pKa = 10.23PSSDD217 pKa = 3.45SVGQKK222 pKa = 8.88ATEE225 pKa = 3.89QASKK229 pKa = 10.49RR230 pKa = 11.84RR231 pKa = 11.84QRR233 pKa = 11.84SPSPSSPRR241 pKa = 11.84HH242 pKa = 4.34TRR244 pKa = 11.84SRR246 pKa = 11.84TWQSDD251 pKa = 2.78GDD253 pKa = 4.18TSSSSPGISTRR264 pKa = 11.84RR265 pKa = 11.84RR266 pKa = 11.84RR267 pKa = 11.84RR268 pKa = 11.84EE269 pKa = 3.98GKK271 pKa = 8.32STTQRR276 pKa = 11.84RR277 pKa = 11.84EE278 pKa = 3.75RR279 pKa = 11.84PSRR282 pKa = 11.84ATSPGVAPEE291 pKa = 4.0EE292 pKa = 3.93VGRR295 pKa = 11.84RR296 pKa = 11.84HH297 pKa = 6.98RR298 pKa = 11.84FTQRR302 pKa = 11.84KK303 pKa = 7.77GLSRR307 pKa = 11.84LGQLQEE313 pKa = 4.32DD314 pKa = 4.14ARR316 pKa = 11.84DD317 pKa = 3.63PPIILLKK324 pKa = 10.96GPANTLKK331 pKa = 10.57CYY333 pKa = 10.45RR334 pKa = 11.84FRR336 pKa = 11.84CRR338 pKa = 11.84SKK340 pKa = 10.62CRR342 pKa = 11.84SLIYY346 pKa = 10.52RR347 pKa = 11.84MSTVFSWVGEE357 pKa = 4.22GPEE360 pKa = 3.94RR361 pKa = 11.84LGEE364 pKa = 4.03PRR366 pKa = 11.84MLLAFKK372 pKa = 10.59DD373 pKa = 3.39KK374 pKa = 10.34EE375 pKa = 3.78QRR377 pKa = 11.84QRR379 pKa = 11.84FLSTVHH385 pKa = 6.13LPKK388 pKa = 9.91GTHH391 pKa = 5.62YY392 pKa = 11.42SLGNLNSLL400 pKa = 4.21

Molecular weight: 46.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2413

93

617

344.7

38.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.263 ± 0.438

2.196 ± 0.788

6.672 ± 0.469

5.802 ± 0.783

4.31 ± 0.443

6.009 ± 0.792

1.782 ± 0.117

5.636 ± 0.945

5.222 ± 0.792

8.91 ± 0.848

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.575 ± 0.374

4.642 ± 0.729

6.051 ± 0.964

4.434 ± 0.371

5.802 ± 1.05

8.869 ± 0.792

6.299 ± 0.695

6.216 ± 0.573

1.202 ± 0.304

3.108 ± 0.634
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski