Bibersteinia trehalosi USDA-ARS-USMARC-192

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Bibersteinia; Bibersteinia trehalosi

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2244 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M4R7T1|M4R7T1_BIBTR HTH-type transcriptional regulator MetR OS=Bibersteinia trehalosi USDA-ARS-USMARC-192 OX=1171377 GN=WQG_19030 PE=3 SV=1
MM1 pKa = 7.57NDD3 pKa = 2.74INIPLTFTDD12 pKa = 3.61AAANKK17 pKa = 9.75VKK19 pKa = 10.38FLIEE23 pKa = 4.68GEE25 pKa = 4.32DD26 pKa = 3.72NPNLRR31 pKa = 11.84LRR33 pKa = 11.84VYY35 pKa = 9.12ITGGGCSGFQYY46 pKa = 11.03GFTFDD51 pKa = 4.96DD52 pKa = 4.19QINDD56 pKa = 3.3GDD58 pKa = 4.13LTVEE62 pKa = 4.06NQNVGLVVDD71 pKa = 4.64PMSLQYY77 pKa = 11.05LIGATVDD84 pKa = 3.68YY85 pKa = 11.33VDD87 pKa = 4.03GLEE90 pKa = 4.06GSRR93 pKa = 11.84FVVQNPNASSTCGCGSSFSII113 pKa = 5.02

Molecular weight: 12.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|M4R3Y6|M4R3Y6_BIBTR Imidazole glycerol phosphate synthase subunit HisH OS=Bibersteinia trehalosi USDA-ARS-USMARC-192 OX=1171377 GN=hisH PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.49RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.91GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.15GRR39 pKa = 11.84KK40 pKa = 8.87SLSAA44 pKa = 3.86

Molecular weight: 5.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2244

0

2244

716193

37

4676

319.2

35.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.973 ± 0.066

0.988 ± 0.021

4.842 ± 0.044

6.314 ± 0.073

4.405 ± 0.05

6.863 ± 0.068

2.103 ± 0.028

6.776 ± 0.049

5.893 ± 0.051

10.37 ± 0.098

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.359 ± 0.031

4.991 ± 0.12

3.693 ± 0.046

4.944 ± 0.056

4.386 ± 0.056

5.912 ± 0.052

5.241 ± 0.095

6.662 ± 0.058

1.16 ± 0.02

3.124 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski