Gordonia phage Chikenjars

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Deejayvirinae; Kenoshavirus; Gordonia virus Chikenjars

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 92 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5J6D934|A0A5J6D934_9CAUD Uncharacterized protein OS=Gordonia phage Chikenjars OX=2601686 GN=61 PE=4 SV=1
MM1 pKa = 7.08TRR3 pKa = 11.84IMWNSIGQRR12 pKa = 11.84RR13 pKa = 11.84YY14 pKa = 9.83EE15 pKa = 3.89VGIDD19 pKa = 3.19RR20 pKa = 11.84GVLYY24 pKa = 10.62LPQEE28 pKa = 4.91GIAVPWNGLTSVSDD42 pKa = 3.63VSDD45 pKa = 3.52TVVEE49 pKa = 3.82PLYY52 pKa = 11.11FNGIKK57 pKa = 10.65YY58 pKa = 10.0YY59 pKa = 10.72DD60 pKa = 3.63YY61 pKa = 11.43VSRR64 pKa = 11.84GDD66 pKa = 3.52YY67 pKa = 10.72KK68 pKa = 10.83GTLKK72 pKa = 10.92AFTYY76 pKa = 10.28PEE78 pKa = 4.17EE79 pKa = 4.39FEE81 pKa = 5.79LYY83 pKa = 10.68DD84 pKa = 3.86GVQEE88 pKa = 4.19SGNGIFVTGQIPTGVFHH105 pKa = 7.35LSYY108 pKa = 10.01RR109 pKa = 11.84TMIGDD114 pKa = 5.03DD115 pKa = 3.22IDD117 pKa = 4.41GVGGGYY123 pKa = 9.95KK124 pKa = 9.47IHH126 pKa = 6.39VLYY129 pKa = 11.03NLTAKK134 pKa = 10.21PSNKK138 pKa = 9.39TYY140 pKa = 9.94STINNSQAAQEE151 pKa = 4.33FSWEE155 pKa = 4.03LSSVPMAGLNLRR167 pKa = 11.84PSSHH171 pKa = 7.22IIFDD175 pKa = 3.69TTKK178 pKa = 7.99MHH180 pKa = 7.25EE181 pKa = 3.86IAIAEE186 pKa = 4.29VEE188 pKa = 4.13QALYY192 pKa = 8.57GTDD195 pKa = 3.43TQDD198 pKa = 3.43PQMKK202 pKa = 9.57TIDD205 pKa = 3.71EE206 pKa = 4.64FEE208 pKa = 5.25FITTTAAEE216 pKa = 4.15IEE218 pKa = 4.34IVDD221 pKa = 4.25NGDD224 pKa = 3.83GTWSASGSDD233 pKa = 3.79YY234 pKa = 10.77FIKK237 pKa = 10.53QMPGVGLFTIKK248 pKa = 10.43EE249 pKa = 3.8ADD251 pKa = 3.22AVYY254 pKa = 10.98VDD256 pKa = 4.43DD257 pKa = 4.06EE258 pKa = 4.72TYY260 pKa = 10.49EE261 pKa = 3.94ISTTEE266 pKa = 3.77SS267 pKa = 2.95

Molecular weight: 29.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5J6D936|A0A5J6D936_9CAUD Uncharacterized protein OS=Gordonia phage Chikenjars OX=2601686 GN=65 PE=4 SV=1
MM1 pKa = 7.42ASKK4 pKa = 10.42IITHH8 pKa = 7.24IITGEE13 pKa = 3.57KK14 pKa = 9.94RR15 pKa = 11.84KK16 pKa = 9.54IVRR19 pKa = 11.84TAIDD23 pKa = 3.1PRR25 pKa = 11.84YY26 pKa = 10.13YY27 pKa = 10.71VVSDD31 pKa = 3.45LNGRR35 pKa = 11.84GQRR38 pKa = 11.84IMRR41 pKa = 11.84KK42 pKa = 7.49STVAIEE48 pKa = 4.09WSTSVV53 pKa = 3.38

Molecular weight: 6.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

92

0

92

19206

30

1703

208.8

23.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.659 ± 0.533

0.609 ± 0.109

6.071 ± 0.284

6.92 ± 0.327

3.52 ± 0.225

7.581 ± 0.404

2.088 ± 0.213

5.852 ± 0.263

5.936 ± 0.342

8.096 ± 0.382

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.76 ± 0.124

4.394 ± 0.171

4.207 ± 0.293

3.457 ± 0.147

4.941 ± 0.348

6.644 ± 0.201

6.488 ± 0.242

7.196 ± 0.214

1.307 ± 0.119

3.275 ± 0.267
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski