Rhinolophus ferrumequinum papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Treisdeltapapillomavirus; Treisdeltapapillomavirus 1

Average proteome isoelectric point is 5.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W8EH64|W8EH64_9PAPI Protein E7 OS=Rhinolophus ferrumequinum papillomavirus 1 OX=1464074 GN=E7 PE=3 SV=1
MM1 pKa = 7.64RR2 pKa = 11.84GSHH5 pKa = 6.57IDD7 pKa = 3.36LRR9 pKa = 11.84DD10 pKa = 3.71IILQEE15 pKa = 3.95EE16 pKa = 4.81PEE18 pKa = 4.59NIDD21 pKa = 3.77LRR23 pKa = 11.84CDD25 pKa = 3.55EE26 pKa = 4.38ILQEE30 pKa = 4.28EE31 pKa = 4.77EE32 pKa = 4.68EE33 pKa = 4.33EE34 pKa = 4.32QQVHH38 pKa = 5.64GLISRR43 pKa = 11.84QAFQVAICCGLCQRR57 pKa = 11.84PIKK60 pKa = 9.62FVCLTTILALRR71 pKa = 11.84QLEE74 pKa = 4.03QLLFGPLDD82 pKa = 3.96FVCVRR87 pKa = 11.84CVNTHH92 pKa = 5.62EE93 pKa = 4.25LHH95 pKa = 7.14HH96 pKa = 6.64GGG98 pKa = 4.14

Molecular weight: 11.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W8EG07|W8EG07_9PAPI Replication protein E1 OS=Rhinolophus ferrumequinum papillomavirus 1 OX=1464074 GN=E1 PE=3 SV=1
MM1 pKa = 7.06EE2 pKa = 4.73TLSSRR7 pKa = 11.84LEE9 pKa = 4.21SVQDD13 pKa = 3.75ALLTLYY19 pKa = 10.25EE20 pKa = 4.04QDD22 pKa = 3.89SNRR25 pKa = 11.84LDD27 pKa = 4.03DD28 pKa = 6.08QIKK31 pKa = 9.27QWTLVKK37 pKa = 10.55EE38 pKa = 4.4EE39 pKa = 4.12NVLLHH44 pKa = 6.81AARR47 pKa = 11.84KK48 pKa = 9.77KK49 pKa = 10.7GITRR53 pKa = 11.84LGMHH57 pKa = 6.62MVPTLQSSEE66 pKa = 3.55ARR68 pKa = 11.84ARR70 pKa = 11.84DD71 pKa = 3.99AIEE74 pKa = 3.74MEE76 pKa = 5.03LYY78 pKa = 10.57LKK80 pKa = 10.02SLRR83 pKa = 11.84QSPYY87 pKa = 9.19GTEE90 pKa = 3.86PWNLAQTTRR99 pKa = 11.84EE100 pKa = 4.04RR101 pKa = 11.84FLAAPPYY108 pKa = 9.95CFKK111 pKa = 11.01KK112 pKa = 10.6DD113 pKa = 3.48GSNVDD118 pKa = 3.19VYY120 pKa = 11.83YY121 pKa = 11.1DD122 pKa = 3.59NDD124 pKa = 3.43KK125 pKa = 11.3DD126 pKa = 3.72NSVRR130 pKa = 11.84YY131 pKa = 7.88ITWGAIYY138 pKa = 9.38YY139 pKa = 10.46QNGNDD144 pKa = 4.03DD145 pKa = 3.13WHH147 pKa = 6.43KK148 pKa = 8.04VQGRR152 pKa = 11.84IEE154 pKa = 4.42HH155 pKa = 7.01DD156 pKa = 2.96GLYY159 pKa = 10.06YY160 pKa = 10.21VQHH163 pKa = 7.46DD164 pKa = 4.43GLKK167 pKa = 8.52VTYY170 pKa = 10.66VDD172 pKa = 5.29FAAEE176 pKa = 3.7ASAYY180 pKa = 10.52SRR182 pKa = 11.84TGSWRR187 pKa = 11.84VVYY190 pKa = 10.47NNKK193 pKa = 8.32TVLPDD198 pKa = 3.29NSVASSRR205 pKa = 11.84SGRR208 pKa = 11.84QRR210 pKa = 11.84TSSPTGPGAEE220 pKa = 3.95YY221 pKa = 10.46SPRR224 pKa = 11.84STTPTDD230 pKa = 3.47TVVATPLKK238 pKa = 10.52ASKK241 pKa = 10.3KK242 pKa = 8.44DD243 pKa = 3.13TAAGVRR249 pKa = 11.84RR250 pKa = 11.84GTRR253 pKa = 11.84HH254 pKa = 5.78HH255 pKa = 6.7NGAGRR260 pKa = 11.84RR261 pKa = 11.84GGGRR265 pKa = 11.84RR266 pKa = 11.84VQQRR270 pKa = 11.84KK271 pKa = 9.42SDD273 pKa = 3.97PKK275 pKa = 9.98RR276 pKa = 11.84GAAITPPSPSEE287 pKa = 3.61VGGRR291 pKa = 11.84HH292 pKa = 4.37QTPQRR297 pKa = 11.84RR298 pKa = 11.84SGSRR302 pKa = 11.84LQRR305 pKa = 11.84LLQEE309 pKa = 4.8ARR311 pKa = 11.84DD312 pKa = 3.97PPAVLLKK319 pKa = 10.81GQANTLKK326 pKa = 10.56CFRR329 pKa = 11.84FQAKK333 pKa = 10.07AKK335 pKa = 10.06FAGQFRR341 pKa = 11.84SVSTTFYY348 pKa = 7.95WTASEE353 pKa = 4.2GTDD356 pKa = 2.73RR357 pKa = 11.84VGRR360 pKa = 11.84ARR362 pKa = 11.84VIFLFTDD369 pKa = 3.24KK370 pKa = 10.95GQRR373 pKa = 11.84EE374 pKa = 4.11RR375 pKa = 11.84FMSRR379 pKa = 11.84VKK381 pKa = 10.38FPPSIEE387 pKa = 4.2TVLLNMDD394 pKa = 4.28GFF396 pKa = 4.35

Molecular weight: 44.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2282

98

610

380.3

42.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.179 ± 0.429

2.016 ± 0.758

6.31 ± 0.262

6.486 ± 0.646

4.689 ± 0.333

6.573 ± 0.665

2.235 ± 0.168

4.251 ± 0.558

4.514 ± 0.864

8.282 ± 0.802

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.972 ± 0.458

3.769 ± 0.586

6.223 ± 0.899

4.514 ± 0.417

6.836 ± 0.851

7.406 ± 0.7

6.398 ± 0.569

7.143 ± 0.729

1.227 ± 0.369

2.98 ± 0.348
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski