Cedratvirus lausannensis

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses; Pithoviridae

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 643 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A285PXK0|A0A285PXK0_9VIRU Uncharacterized protein OS=Cedratvirus lausannensis OX=2023205 GN=BQ9231_00481 PE=4 SV=1
MM1 pKa = 7.61SSSTYY6 pKa = 9.47LTFNIVRR13 pKa = 11.84NGNLLQVHH21 pKa = 5.93TEE23 pKa = 3.63AALPQGKK30 pKa = 8.98LVIDD34 pKa = 4.08AEE36 pKa = 4.65GSSFVSLRR44 pKa = 11.84YY45 pKa = 9.82NINSALIYY53 pKa = 10.81ARR55 pKa = 11.84DD56 pKa = 3.43EE57 pKa = 4.13LGILFTRR64 pKa = 11.84PYY66 pKa = 9.93KK67 pKa = 10.37IVWRR71 pKa = 11.84EE72 pKa = 3.35NGQYY76 pKa = 7.99QEE78 pKa = 4.02RR79 pKa = 11.84VYY81 pKa = 10.74TVDD84 pKa = 5.17DD85 pKa = 3.95NLPYY89 pKa = 10.18HH90 pKa = 6.79ASFVGDD96 pKa = 3.33YY97 pKa = 10.74SVEE100 pKa = 4.07LVNLEE105 pKa = 4.04VLEE108 pKa = 4.26EE109 pKa = 4.25EE110 pKa = 5.13EE111 pKa = 5.07DD112 pKa = 3.99EE113 pKa = 5.08FWNEE117 pKa = 3.69DD118 pKa = 3.43DD119 pKa = 4.86RR120 pKa = 11.84EE121 pKa = 3.94EE122 pKa = 5.23DD123 pKa = 3.21EE124 pKa = 6.73FYY126 pKa = 11.28DD127 pKa = 4.21EE128 pKa = 5.2LDD130 pKa = 4.14DD131 pKa = 4.98YY132 pKa = 11.81EE133 pKa = 4.49EE134 pKa = 4.17EE135 pKa = 5.0PYY137 pKa = 10.75LQEE140 pKa = 4.1EE141 pKa = 4.45EE142 pKa = 5.0EE143 pKa = 4.57YY144 pKa = 11.36

Molecular weight: 17.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A285PWK3|A0A285PWK3_9VIRU Uncharacterized protein OS=Cedratvirus lausannensis OX=2023205 GN=BQ9231_00111 PE=4 SV=1
MM1 pKa = 7.43GRR3 pKa = 11.84RR4 pKa = 11.84SHH6 pKa = 6.98RR7 pKa = 11.84KK8 pKa = 7.48IKK10 pKa = 9.09QRR12 pKa = 11.84KK13 pKa = 8.6RR14 pKa = 11.84MVLPHH19 pKa = 6.29PRR21 pKa = 11.84SNKK24 pKa = 9.63GDD26 pKa = 3.54TGSGKK31 pKa = 10.33VKK33 pKa = 10.29EE34 pKa = 4.44ISPNCKK40 pKa = 8.69PLWWSVHH47 pKa = 4.8QEE49 pKa = 3.86ALKK52 pKa = 8.86QTSPSARR59 pKa = 11.84FEE61 pKa = 3.99MYY63 pKa = 10.34DD64 pKa = 4.04IIDD67 pKa = 3.52SYY69 pKa = 11.43PRR71 pKa = 11.84VRR73 pKa = 11.84GQSRR77 pKa = 11.84PFDD80 pKa = 3.58NPRR83 pKa = 11.84FLHH86 pKa = 6.77EE87 pKa = 6.44DD88 pKa = 4.15FFQYY92 pKa = 9.69TWDD95 pKa = 3.42LYY97 pKa = 11.35KK98 pKa = 10.62RR99 pKa = 11.84IHH101 pKa = 5.92RR102 pKa = 11.84TNHH105 pKa = 4.26II106 pKa = 3.82

Molecular weight: 12.81 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

643

0

643

158466

32

1580

246.4

28.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.565 ± 0.093

2.421 ± 0.095

5.158 ± 0.065

7.596 ± 0.116

4.52 ± 0.069

6.008 ± 0.196

1.968 ± 0.048

5.527 ± 0.079

6.16 ± 0.126

10.681 ± 0.128

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.974 ± 0.047

4.482 ± 0.066

4.188 ± 0.079

3.499 ± 0.06

5.348 ± 0.089

7.346 ± 0.133

5.016 ± 0.159

6.438 ± 0.084

1.508 ± 0.065

4.599 ± 0.075
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski