Catenulispora acidiphila (strain DSM 44928 / JCM 14897 / NBRC 102108 / NRRL B-24433 / ID139908)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Catenulisporales; Catenulisporaceae; Catenulispora; Catenulispora acidiphila

Average proteome isoelectric point is 6.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8909 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C7QIW6|C7QIW6_CATAD dTDP-glucose 4 6-dehydratase OS=Catenulispora acidiphila (strain DSM 44928 / JCM 14897 / NBRC 102108 / NRRL B-24433 / ID139908) OX=479433 GN=Caci_8193 PE=3 SV=1
MM1 pKa = 7.6AGAAALTALSCAMLSGGPAAASVLPAPYY29 pKa = 10.58GDD31 pKa = 4.81LNADD35 pKa = 3.6GNIDD39 pKa = 4.06LLSVSSTGALQYY51 pKa = 9.7WAGSGTGSVASPVAEE66 pKa = 4.24PSAGDD71 pKa = 3.38FTGDD75 pKa = 3.56VIEE78 pKa = 4.79GAGNFNRR85 pKa = 11.84SSYY88 pKa = 10.92QSLFLYY94 pKa = 10.79SSATDD99 pKa = 3.28HH100 pKa = 7.18AYY102 pKa = 10.82VEE104 pKa = 5.07LGDD107 pKa = 3.73NTGQFSTANEE117 pKa = 4.18VVVPPPSGEE126 pKa = 3.97ASWPVITQLVSPGDD140 pKa = 3.53ITGHH144 pKa = 5.5NRR146 pKa = 11.84ADD148 pKa = 3.31LVARR152 pKa = 11.84VGDD155 pKa = 3.73QLEE158 pKa = 4.56VIPNVALGHH167 pKa = 5.87YY168 pKa = 7.11GAPVAVAGSGWSGRR182 pKa = 11.84TVIGVVDD189 pKa = 3.63ATGDD193 pKa = 3.92GIKK196 pKa = 10.7DD197 pKa = 3.97LIARR201 pKa = 11.84DD202 pKa = 3.83DD203 pKa = 3.63ATGVVWLYY211 pKa = 10.8QGVAGGTFGDD221 pKa = 3.76EE222 pKa = 4.14TTRR225 pKa = 11.84VQIGTGLDD233 pKa = 3.16AADD236 pKa = 3.74YY237 pKa = 10.06PFVITKK243 pKa = 10.44GDD245 pKa = 3.68ADD247 pKa = 4.22GDD249 pKa = 3.95GHH251 pKa = 8.18ADD253 pKa = 3.45VYY255 pKa = 11.61AVGASGGLYY264 pKa = 10.34LSAGNAGGGFGAPTLVSSDD283 pKa = 3.99PAWTGITALGG293 pKa = 3.56

Molecular weight: 29.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C7Q0H6|C7Q0H6_CATAD Uncharacterized protein OS=Catenulispora acidiphila (strain DSM 44928 / JCM 14897 / NBRC 102108 / NRRL B-24433 / ID139908) OX=479433 GN=Caci_8694 PE=4 SV=1
MM1 pKa = 7.56WARR4 pKa = 11.84ALKK7 pKa = 10.28RR8 pKa = 11.84LAALSIPVRR17 pKa = 11.84MLRR20 pKa = 11.84PVWFFTMRR28 pKa = 11.84FLPKK32 pKa = 9.86RR33 pKa = 11.84FRR35 pKa = 11.84PMWFLPTRR43 pKa = 11.84FLPRR47 pKa = 11.84LAAGG51 pKa = 3.73

Molecular weight: 6.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8909

0

8909

3085666

29

7149

346.4

36.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.097 ± 0.04

0.751 ± 0.007

5.88 ± 0.022

5.123 ± 0.03

2.895 ± 0.016

9.275 ± 0.027

2.176 ± 0.014

3.6 ± 0.015

2.1 ± 0.018

9.82 ± 0.034

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.831 ± 0.01

2.163 ± 0.019

5.909 ± 0.022

3.092 ± 0.017

6.98 ± 0.037

5.854 ± 0.027

6.46 ± 0.033

8.286 ± 0.021

1.528 ± 0.011

2.18 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski