Acidovorax anthurii

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax

Average proteome isoelectric point is 7.05

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4779 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A328ZN69|A0A328ZN69_9BURK Rod shape-determining protein MreD OS=Acidovorax anthurii OX=78229 GN=AX018_100149 PE=3 SV=1
MM1 pKa = 7.64SNQCTYY7 pKa = 7.9TVRR10 pKa = 11.84ATWFGDD16 pKa = 3.66AEE18 pKa = 4.34VTLQVDD24 pKa = 4.4LDD26 pKa = 3.71ILTPEE31 pKa = 4.55LAAEE35 pKa = 4.34INGFWSEE42 pKa = 4.02DD43 pKa = 3.61DD44 pKa = 3.59SRR46 pKa = 11.84LAAEE50 pKa = 5.1DD51 pKa = 4.3GNVLLAVVRR60 pKa = 11.84MFGQAAIRR68 pKa = 11.84YY69 pKa = 7.91YY70 pKa = 10.19MGDD73 pKa = 3.15GGASFGPTADD83 pKa = 4.33PYY85 pKa = 9.68HH86 pKa = 5.81TAAVIEE92 pKa = 4.47HH93 pKa = 6.83EE94 pKa = 4.56GEE96 pKa = 3.92GWPEE100 pKa = 3.65VDD102 pKa = 4.52SLGILITAAEE112 pKa = 4.41VSVVDD117 pKa = 3.9YY118 pKa = 11.55DD119 pKa = 5.09DD120 pKa = 3.8VTLEE124 pKa = 3.97AAA126 pKa = 4.12

Molecular weight: 13.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A328ZGL2|A0A328ZGL2_9BURK Uncharacterized protein OS=Acidovorax anthurii OX=78229 GN=AX018_101151 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.25QPSKK9 pKa = 7.79TRR11 pKa = 11.84RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.79GFLVRR21 pKa = 11.84MKK23 pKa = 9.7TRR25 pKa = 11.84GGRR28 pKa = 11.84AVINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.58GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4779

0

4779

1605248

28

4661

335.9

36.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.913 ± 0.058

0.915 ± 0.013

5.145 ± 0.028

5.134 ± 0.031

3.263 ± 0.023

8.779 ± 0.037

2.337 ± 0.022

3.912 ± 0.028

2.624 ± 0.033

10.599 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.278 ± 0.018

2.276 ± 0.021

5.783 ± 0.034

4.119 ± 0.026

7.551 ± 0.034

5.218 ± 0.03

5.061 ± 0.033

7.468 ± 0.031

1.513 ± 0.018

2.112 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski