Aureibaculum marinum

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aureibaculum

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3096 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3N4NWT2|A0A3N4NWT2_9FLAO Uncharacterized protein OS=Aureibaculum marinum OX=2487930 GN=EGM88_09820 PE=4 SV=1
MM1 pKa = 7.62IKK3 pKa = 10.14QFIKK7 pKa = 10.8LSTLCFVILLGFTSCDD23 pKa = 3.52SDD25 pKa = 4.09DD26 pKa = 4.37QDD28 pKa = 3.67PVMPKK33 pKa = 10.22GDD35 pKa = 3.72YY36 pKa = 9.26EE37 pKa = 3.93NGYY40 pKa = 9.98FVVNEE45 pKa = 4.41GNFGTPNGSVTFIDD59 pKa = 5.44DD60 pKa = 4.72NLLQEE65 pKa = 4.37NNEE68 pKa = 3.88IFQSVNSTTLGDD80 pKa = 3.58VVQYY84 pKa = 9.46ITFEE88 pKa = 4.33DD89 pKa = 4.41DD90 pKa = 3.26YY91 pKa = 11.95GFIVVNNSNKK101 pKa = 9.2IEE103 pKa = 4.15VVNRR107 pKa = 11.84YY108 pKa = 6.26TFEE111 pKa = 4.02SVATITEE118 pKa = 4.04NLQLPRR124 pKa = 11.84YY125 pKa = 9.44AVVEE129 pKa = 3.95NGKK132 pKa = 10.7LYY134 pKa = 9.18VTNSGTNSVEE144 pKa = 3.9VFDD147 pKa = 5.88ANTFAYY153 pKa = 9.6INSIDD158 pKa = 3.31IDD160 pKa = 3.81KK161 pKa = 9.81TVEE164 pKa = 4.2EE165 pKa = 4.31IVEE168 pKa = 4.36EE169 pKa = 4.0NDD171 pKa = 3.31LLYY174 pKa = 11.58VMNASFGFGNEE185 pKa = 3.17ITVINTQSDD194 pKa = 4.39TVVKK198 pKa = 9.62TITVGDD204 pKa = 3.95GLNSIEE210 pKa = 4.24VEE212 pKa = 4.12DD213 pKa = 5.56DD214 pKa = 2.78ILYY217 pKa = 10.3ALHH220 pKa = 6.6SAGITKK226 pKa = 10.17VNTATNEE233 pKa = 4.21VIGEE237 pKa = 4.23VPFEE241 pKa = 5.51DD242 pKa = 4.45GLLMASKK249 pKa = 11.11LEE251 pKa = 3.83VDD253 pKa = 3.68DD254 pKa = 4.61NYY256 pKa = 10.62IYY258 pKa = 10.61FLSGSKK264 pKa = 9.67IFKK267 pKa = 9.25YY268 pKa = 10.81NKK270 pKa = 10.04DD271 pKa = 3.41VTSLANTEE279 pKa = 4.39LVDD282 pKa = 3.92TQVEE286 pKa = 4.15DD287 pKa = 3.8ASWYY291 pKa = 9.39IGYY294 pKa = 9.7GFNVIDD300 pKa = 3.89NKK302 pKa = 10.85LFYY305 pKa = 10.32TDD307 pKa = 3.07VKK309 pKa = 10.85GFSEE313 pKa = 4.02NSEE316 pKa = 4.12VKK318 pKa = 10.75VYY320 pKa = 10.98DD321 pKa = 4.07LNGDD325 pKa = 4.05LLTTFNAGIGANGVYY340 pKa = 10.58EE341 pKa = 4.1NDD343 pKa = 3.3

Molecular weight: 38.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3N4NTB4|A0A3N4NTB4_9FLAO Thioredoxin OS=Aureibaculum marinum OX=2487930 GN=EGM88_03280 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSKK10 pKa = 10.15RR11 pKa = 11.84KK12 pKa = 9.6RR13 pKa = 11.84KK14 pKa = 8.29NKK16 pKa = 9.34HH17 pKa = 4.05GFRR20 pKa = 11.84EE21 pKa = 4.13RR22 pKa = 11.84MSSVNGRR29 pKa = 11.84KK30 pKa = 9.11VLARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.76GRR40 pKa = 11.84KK41 pKa = 8.18RR42 pKa = 11.84LSVSSDD48 pKa = 3.33PSPKK52 pKa = 10.05KK53 pKa = 10.54

Molecular weight: 6.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3096

0

3096

1089046

24

2458

351.8

39.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.867 ± 0.04

0.661 ± 0.012

5.578 ± 0.05

6.445 ± 0.039

5.122 ± 0.038

6.275 ± 0.053

1.7 ± 0.019

8.435 ± 0.043

8.57 ± 0.064

9.23 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.043 ± 0.019

6.746 ± 0.039

3.292 ± 0.023

3.176 ± 0.025

3.164 ± 0.024

6.506 ± 0.03

5.816 ± 0.041

6.062 ± 0.041

1.054 ± 0.017

4.26 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski