Chrysochromulina parva virus

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; Algavirales; Phycodnaviridae; Prymnesiovirus; unclassified Prymnesiovirus

Average proteome isoelectric point is 7.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 45 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Y6GRC3|A0A4Y6GRC3_9PHYC Transcriptional regulatory protein OS=Chrysochromulina parva virus OX=2565304 PE=4 SV=1
MM1 pKa = 7.45SFLFKK6 pKa = 10.89FIDD9 pKa = 3.48SGFLLTFGLILLISGGIMLYY29 pKa = 10.02CYY31 pKa = 10.23RR32 pKa = 11.84RR33 pKa = 11.84LNLLEE38 pKa = 4.29KK39 pKa = 10.71SVIEE43 pKa = 4.44HH44 pKa = 6.49GKK46 pKa = 9.46ILQNFIMNYY55 pKa = 8.65NIQMQHH61 pKa = 6.11FSLLNKK67 pKa = 10.48SMTNSSSNTNATNVEE82 pKa = 4.05NSRR85 pKa = 11.84AEE87 pKa = 3.88YY88 pKa = 11.19VEE90 pKa = 3.52FDD92 pKa = 3.34KK93 pKa = 11.45VKK95 pKa = 10.58KK96 pKa = 10.31INLGDD101 pKa = 4.27KK102 pKa = 10.46ISVSDD107 pKa = 5.38DD108 pKa = 3.12EE109 pKa = 6.62DD110 pKa = 3.79EE111 pKa = 6.31ADD113 pKa = 6.24DD114 pKa = 5.73EE115 pKa = 6.65DD116 pKa = 6.93DD117 pKa = 6.47DD118 pKa = 7.52DD119 pKa = 7.51DD120 pKa = 7.29DD121 pKa = 7.39DD122 pKa = 6.44EE123 pKa = 8.1DD124 pKa = 6.79DD125 pKa = 6.45DD126 pKa = 7.45DD127 pKa = 7.49DD128 pKa = 6.96DD129 pKa = 7.33DD130 pKa = 4.85EE131 pKa = 7.44DD132 pKa = 4.39EE133 pKa = 6.61DD134 pKa = 4.98EE135 pKa = 6.38DD136 pKa = 5.7EE137 pKa = 5.38DD138 pKa = 6.48DD139 pKa = 4.22EE140 pKa = 7.24DD141 pKa = 5.22EE142 pKa = 6.73DD143 pKa = 5.67EE144 pKa = 6.56DD145 pKa = 6.54DD146 pKa = 6.53DD147 pKa = 6.55DD148 pKa = 7.28DD149 pKa = 5.38EE150 pKa = 7.51DD151 pKa = 5.02EE152 pKa = 6.75DD153 pKa = 4.02EE154 pKa = 5.22DD155 pKa = 4.73KK156 pKa = 11.82NNTEE160 pKa = 4.23SLKK163 pKa = 10.57ISNNKK168 pKa = 10.04LEE170 pKa = 4.51DD171 pKa = 4.0LEE173 pKa = 5.01DD174 pKa = 5.08LEE176 pKa = 5.57DD177 pKa = 5.76LEE179 pKa = 5.77DD180 pKa = 5.65LEE182 pKa = 5.0DD183 pKa = 3.85LEE185 pKa = 5.76KK186 pKa = 10.61IEE188 pKa = 6.3LSDD191 pKa = 3.53QTISSIDD198 pKa = 3.6DD199 pKa = 3.23EE200 pKa = 4.89TFLKK204 pKa = 10.59NLPINLDD211 pKa = 3.63SFTLDD216 pKa = 3.3NTNNEE221 pKa = 4.0PKK223 pKa = 10.17IINLEE228 pKa = 4.27NIQDD232 pKa = 4.08SNTKK236 pKa = 8.67TGEE239 pKa = 3.87RR240 pKa = 11.84KK241 pKa = 9.86NYY243 pKa = 10.82SKK245 pKa = 10.71MKK247 pKa = 10.4VDD249 pKa = 3.88DD250 pKa = 4.5LKK252 pKa = 10.67TLVVTKK258 pKa = 10.69NLTDD262 pKa = 3.46NEE264 pKa = 4.52SAQKK268 pKa = 9.41MKK270 pKa = 10.83KK271 pKa = 9.61SDD273 pKa = 3.91LVKK276 pKa = 10.71LLQKK280 pKa = 10.32EE281 pKa = 4.16

Molecular weight: 32.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Y6GT19|A0A4Y6GT19_9PHYC Uncharacterized protein OS=Chrysochromulina parva virus OX=2565304 PE=4 SV=1
MM1 pKa = 7.33SRR3 pKa = 11.84RR4 pKa = 11.84STRR7 pKa = 11.84VVSVSSDD14 pKa = 2.86SDD16 pKa = 3.28SRR18 pKa = 11.84TRR20 pKa = 11.84SKK22 pKa = 11.16SKK24 pKa = 10.67NSTLFRR30 pKa = 11.84AYY32 pKa = 9.67KK33 pKa = 10.46SVFGPSKK40 pKa = 10.86SKK42 pKa = 10.27LASIARR48 pKa = 11.84FRR50 pKa = 11.84SVIEE54 pKa = 4.43GCDD57 pKa = 3.21EE58 pKa = 4.0FLNNITDD65 pKa = 3.66KK66 pKa = 11.12NIPDD70 pKa = 4.77LYY72 pKa = 10.83GQIPKK77 pKa = 9.92ILNIRR82 pKa = 11.84NEE84 pKa = 4.23NYY86 pKa = 10.18DD87 pKa = 3.71KK88 pKa = 11.48LSDD91 pKa = 3.69ATRR94 pKa = 11.84LTAEE98 pKa = 5.44DD99 pKa = 3.25IAANQAIHH107 pKa = 6.83AKK109 pKa = 9.34IKK111 pKa = 10.43NYY113 pKa = 9.46HH114 pKa = 5.79ANHH117 pKa = 6.89RR118 pKa = 11.84SRR120 pKa = 11.84YY121 pKa = 7.24TSYY124 pKa = 11.16NYY126 pKa = 10.84NLAGTRR132 pKa = 11.84KK133 pKa = 8.6RR134 pKa = 11.84RR135 pKa = 11.84KK136 pKa = 8.38HH137 pKa = 6.05RR138 pKa = 11.84KK139 pKa = 7.85HH140 pKa = 6.43KK141 pKa = 10.41KK142 pKa = 8.47HH143 pKa = 6.15

Molecular weight: 16.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

45

0

45

14096

100

2116

313.2

36.29

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.483 ± 0.364

1.674 ± 0.174

5.314 ± 0.372

6.881 ± 0.539

4.682 ± 0.273

3.497 ± 0.336

1.766 ± 0.202

9.499 ± 0.41

10.577 ± 0.534

10.187 ± 0.83

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.717 ± 0.153

9.776 ± 0.474

2.774 ± 0.36

2.831 ± 0.256

2.887 ± 0.324

7.513 ± 0.72

5.214 ± 0.369

4.072 ± 0.255

0.532 ± 0.093

5.122 ± 0.323
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski