Geodermatophilus dictyosporus

Taxonomy:

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4366 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I5LXP0|A0A1I5LXP0_9ACTN Carbon-monoxide dehydrogenase large subunit OS=Geodermatophilus dictyosporus OX=1523247 GN=SAMN05660464_1960 PE=4 SV=1
MM1 pKa = 7.85RR2 pKa = 11.84VRR4 pKa = 11.84PPAVAALLALALAATGCSTVVAGVASPPPGGLRR37 pKa = 11.84TDD39 pKa = 3.29ATDD42 pKa = 3.49ATDD45 pKa = 4.01ADD47 pKa = 4.46LTVHH51 pKa = 6.6LAEE54 pKa = 5.92AGDD57 pKa = 3.75EE58 pKa = 4.17TDD60 pKa = 4.32RR61 pKa = 11.84IARR64 pKa = 11.84NALADD69 pKa = 3.56VLTYY73 pKa = 9.93WDD75 pKa = 3.39RR76 pKa = 11.84TYY78 pKa = 11.3PEE80 pKa = 4.12VFGGGFGPVDD90 pKa = 3.3GGFWSIDD97 pKa = 3.4PDD99 pKa = 3.7EE100 pKa = 4.99TDD102 pKa = 4.52PADD105 pKa = 5.18LPDD108 pKa = 4.85GPCFPDD114 pKa = 4.55DD115 pKa = 4.91VEE117 pKa = 5.55DD118 pKa = 4.23LADD121 pKa = 3.52NAYY124 pKa = 10.12YY125 pKa = 10.74CPDD128 pKa = 3.84EE129 pKa = 5.02DD130 pKa = 4.41LVVYY134 pKa = 10.46DD135 pKa = 4.31RR136 pKa = 11.84AWMAEE141 pKa = 3.84LAGDD145 pKa = 3.67YY146 pKa = 11.06GPFVVAEE153 pKa = 4.34IMAHH157 pKa = 6.32EE158 pKa = 4.6IAHH161 pKa = 6.66AVQAHH166 pKa = 6.73AGLDD170 pKa = 3.66DD171 pKa = 4.22PSIVAEE177 pKa = 4.24TQAEE181 pKa = 4.46CFAGAWTRR189 pKa = 11.84WVVRR193 pKa = 11.84GNAAHH198 pKa = 6.55FSVRR202 pKa = 11.84PKK204 pKa = 10.82EE205 pKa = 3.93LDD207 pKa = 3.63PYY209 pKa = 11.04LLGYY213 pKa = 10.47LYY215 pKa = 10.83FGDD218 pKa = 4.37EE219 pKa = 4.51VGSSPDD225 pKa = 3.38AEE227 pKa = 4.42DD228 pKa = 3.14AHH230 pKa = 7.9GSVFDD235 pKa = 3.75QLSAFQEE242 pKa = 5.47GYY244 pKa = 11.07ADD246 pKa = 4.26GPVACAAFDD255 pKa = 3.54SSRR258 pKa = 11.84LFTEE262 pKa = 4.41EE263 pKa = 4.67EE264 pKa = 3.87FDD266 pKa = 3.74GDD268 pKa = 3.64EE269 pKa = 4.25AATGGDD275 pKa = 3.57LSYY278 pKa = 10.6EE279 pKa = 4.01AVVAGTGDD287 pKa = 4.23LLTAFWDD294 pKa = 3.61QALTRR299 pKa = 11.84GFPGTDD305 pKa = 3.21PLGGLLDD312 pKa = 4.46APDD315 pKa = 4.04LRR317 pKa = 11.84AADD320 pKa = 3.86GTGTVCGGGGEE331 pKa = 5.62LDD333 pKa = 3.74LQYY336 pKa = 11.22CPVDD340 pKa = 3.48DD341 pKa = 3.87SVRR344 pKa = 11.84YY345 pKa = 10.19DD346 pKa = 3.39GADD349 pKa = 3.43LLEE352 pKa = 4.17PAYY355 pKa = 10.74AEE357 pKa = 4.19VGDD360 pKa = 4.14FAVPTLLGLPYY371 pKa = 11.09AMAVRR376 pKa = 11.84EE377 pKa = 3.98QRR379 pKa = 11.84GLSVDD384 pKa = 3.53DD385 pKa = 4.12AAAVTGSVCATGWLVRR401 pKa = 11.84EE402 pKa = 4.11VHH404 pKa = 6.33RR405 pKa = 11.84GSVDD409 pKa = 3.42GLDD412 pKa = 3.9LALSPGDD419 pKa = 3.39VDD421 pKa = 3.6EE422 pKa = 4.97AAVVLLRR429 pKa = 11.84YY430 pKa = 8.44ATEE433 pKa = 4.04EE434 pKa = 4.09TVVPVPGLSGFEE446 pKa = 4.02LVDD449 pKa = 3.36DD450 pKa = 4.74FRR452 pKa = 11.84RR453 pKa = 11.84GFVDD457 pKa = 4.65GGAACGFF464 pKa = 4.12

Molecular weight: 48.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I5S9Y9|A0A1I5S9Y9_9ACTN DNA gyrase subunit B OS=Geodermatophilus dictyosporus OX=1523247 GN=gyrB PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84SKK15 pKa = 8.58THH17 pKa = 5.46GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILAGRR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 10.08GRR40 pKa = 11.84EE41 pKa = 3.61KK42 pKa = 10.93LSAA45 pKa = 3.78

Molecular weight: 5.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4366

0

4366

1400948

32

2011

320.9

33.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.832 ± 0.071

0.668 ± 0.01

6.255 ± 0.027

5.479 ± 0.035

2.439 ± 0.021

9.917 ± 0.032

1.989 ± 0.017

2.231 ± 0.028

1.138 ± 0.021

10.811 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.43 ± 0.014

1.264 ± 0.015

6.494 ± 0.034

2.558 ± 0.018

8.515 ± 0.043

4.55 ± 0.025

5.984 ± 0.031

10.283 ± 0.034

1.48 ± 0.018

1.683 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski