Acaryochloris sp. RCC1774

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Cyanobacteria/Melainabacteria group; Cyanobacteria; Synechococcales; Acaryochloridaceae; Acaryochloris; unclassified Acaryochloris

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5409 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2W1JSN4|A0A2W1JSN4_9CYAN 3-hydroxyacyl-CoA dehydrogenase OS=Acaryochloris sp. RCC1774 OX=1764569 GN=fadN_1 PE=4 SV=1
MM1 pKa = 7.83AEE3 pKa = 5.1DD4 pKa = 3.93IDD6 pKa = 5.25HH7 pKa = 6.31VAQLLEE13 pKa = 4.24VNACQGCDD21 pKa = 3.36LSGADD26 pKa = 4.46LSGLVLINANLQGANLQGANLQNTYY51 pKa = 11.39LMLSDD56 pKa = 5.01LADD59 pKa = 4.11ANLEE63 pKa = 4.2DD64 pKa = 4.34TNLTAAYY71 pKa = 9.93LYY73 pKa = 11.07GADD76 pKa = 3.96LQGAALKK83 pKa = 10.34GANLTQATLRR93 pKa = 11.84DD94 pKa = 3.87TQLQGATLCEE104 pKa = 4.09ADD106 pKa = 4.38FSGADD111 pKa = 3.39FRR113 pKa = 11.84DD114 pKa = 3.6AEE116 pKa = 4.48LEE118 pKa = 3.92VDD120 pKa = 3.56PDD122 pKa = 3.82EE123 pKa = 5.29ACLEE127 pKa = 4.02RR128 pKa = 11.84LRR130 pKa = 11.84AEE132 pKa = 4.4NAVEE136 pKa = 3.81

Molecular weight: 14.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2W1JUF5|A0A2W1JUF5_9CYAN Uncharacterized protein OS=Acaryochloris sp. RCC1774 OX=1764569 GN=C1752_03773 PE=4 SV=1
MM1 pKa = 7.65GRR3 pKa = 11.84LLKK6 pKa = 10.79DD7 pKa = 3.2KK8 pKa = 8.49THH10 pKa = 6.71PTDD13 pKa = 3.12PMAYY17 pKa = 9.53QDD19 pKa = 4.08PQLKK23 pKa = 10.7AEE25 pKa = 4.48IGRR28 pKa = 11.84LHH30 pKa = 6.26QLTVYY35 pKa = 10.24GRR37 pKa = 11.84WLFVFCLWITVGLLSFMGLRR57 pKa = 11.84SSIDD61 pKa = 2.75LWLEE65 pKa = 3.8YY66 pKa = 8.79FTWAAFRR73 pKa = 11.84AAFRR77 pKa = 11.84YY78 pKa = 10.07NGLATAGLGLCLGTTLAVLLWQSRR102 pKa = 11.84NILFGLPKK110 pKa = 9.86QEE112 pKa = 3.85RR113 pKa = 11.84TRR115 pKa = 11.84LRR117 pKa = 11.84QRR119 pKa = 11.84VMKK122 pKa = 10.47IRR124 pKa = 11.84QQGHH128 pKa = 5.28NHH130 pKa = 6.6PLWKK134 pKa = 10.13LVCQSKK140 pKa = 10.39SRR142 pKa = 11.84PQQ144 pKa = 3.02

Molecular weight: 16.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5409

0

5409

1670264

29

2972

308.8

34.18

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.039 ± 0.035

1.032 ± 0.012

5.249 ± 0.034

6.027 ± 0.034

3.783 ± 0.024

6.956 ± 0.042

2.056 ± 0.021

5.755 ± 0.024

3.869 ± 0.032

11.299 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.981 ± 0.018

3.396 ± 0.026

4.987 ± 0.031

5.968 ± 0.04

5.435 ± 0.03

6.622 ± 0.033

5.672 ± 0.023

6.744 ± 0.026

1.438 ± 0.015

2.692 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski